Pp3c7_5890V3.1 (Pp3c7_5890)

Aliases : Pp3c7_5890

Description : DEAD/DEAH box RNA helicase family protein

Gene families : OG0002123 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002123_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Pp3c7_5890V3.1
Cluster	HCCA: Cluster_69

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00036p00225190	evm_27.TU.AmTr_v1...	RNA processing.messenger ribonucleoprotein particle...	0.02	OrthoFinder output from all 47 species
AT5G11170	No alias	DEAD/DEAH box RNA helicase family protein	0.02	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00001376.21	No alias	DEAD-box ATP-dependent RNA helicase 56 OS=Oryza sativa...	0.01	OrthoFinder output from all 47 species
Cre17.g719000	No alias	RNA processing.messenger ribonucleoprotein particle...	0.01	OrthoFinder output from all 47 species
Dcu_g43300	No alias	helicase UAP56 & original description: none	0.02	OrthoFinder output from all 47 species
Mp1g02350.1	No alias	RNA helicase (Sub2). helicase component UAP56 of...	0.02	OrthoFinder output from all 47 species
Solyc06g066060.3.1	Solyc06g066060	RNA helicase (Sub2). helicase component UAP56 of...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003743	translation initiation factor activity	IEP	HCCA
CC	GO:0005737	cytoplasm	IEP	HCCA
CC	GO:0005852	eukaryotic translation initiation factor 3 complex	IEP	HCCA
MF	GO:0008135	translation factor activity, RNA binding	IEP	HCCA
MF	GO:0045182	translation regulator activity	IEP	HCCA
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR011545	DEAD/DEAH_box_helicase_dom	69	234
IPR001650	Helicase_C	274	381

External Links

No external refs found!