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  5. Pp3c8_460V3.1

Pp3c8_460V3.1 (Pp3c8_460)


Aliases : Pp3c8_460

Description : Pectin lyase-like superfamily protein


Gene families : OG0000083 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000083_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c8_460V3.1
Cluster HCCA: Cluster_37

Target Alias Description ECC score Gene Family Method Actions
Ala_g25188 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Azfi_s0002.g001228 No alias pectin methylesterase & original description: CDS=1-1122 0.01 OrthoFinder output from all 47 species
Ceric.24G024700.1 Ceric.24G024700 pectin methylesterase & original description:... 0.02 OrthoFinder output from all 47 species
Ceric.37G019300.1 Ceric.37G019300 pectin methylesterase & original description:... 0.02 OrthoFinder output from all 47 species
Dac_g00830 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g36178 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g25395 No alias pectin methylesterase & original description: none 0.01 OrthoFinder output from all 47 species
Dde_g47291 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g48343 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os07g46190.1 LOC_Os07g46190 pectin methylesterase 0.01 OrthoFinder output from all 47 species
Len_g08372 No alias pectin methylesterase & original description: none 0.01 OrthoFinder output from all 47 species
Len_g13333 No alias pectin methylesterase & original description: none 0.01 OrthoFinder output from all 47 species
MA_10267810g0010 No alias pectin methylesterase 0.01 OrthoFinder output from all 47 species
MA_14449g0010 No alias pectin methylesterase 0.02 OrthoFinder output from all 47 species
MA_62865g0010 No alias pectin methylesterase 0.01 OrthoFinder output from all 47 species
Ppi_g25901 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g13569 No alias EC_3.1 hydrolase acting on ester bond & original... 0.01 OrthoFinder output from all 47 species
Spa_g25777 No alias pectin methylesterase & original description: none 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0030599 pectinesterase activity IEA Interproscan
BP GO:0042545 cell wall modification IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003746 translation elongation factor activity IEP HCCA
BP GO:0006414 translational elongation IEP HCCA
BP GO:0006629 lipid metabolic process IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP HCCA
MF GO:0016717 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
InterPro domains Description Start Stop
IPR000070 Pectinesterase_cat 75 374
No external refs found!