Pp3c9_18880V3.1 (Pp3c9_18880)

Aliases : Pp3c9_18880

Description : ABC-2 type transporter family protein

Gene families : OG0000888 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000888_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Pp3c9_18880V3.1
Cluster	HCCA: Cluster_48

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00075p00150250	evm_27.TU.AmTr_v1...	ABC transporter G family member 8 OS=Arabidopsis thaliana	0.01	OrthoFinder output from all 47 species
AT2G13610	No alias	ABC-2 type transporter family protein	0.01	OrthoFinder output from all 47 species
Als_g14907	No alias	subfamily ABCG transporter & original description: none	0.01	OrthoFinder output from all 47 species
Azfi_s0120.g046757	No alias	subfamily ABCG transporter & original description: CDS=1-2250	0.02	OrthoFinder output from all 47 species
Cba_g03340	No alias	subfamily ABCG transporter & original description: none	0.01	OrthoFinder output from all 47 species
Cba_g06245	No alias	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Cba_g07276	No alias	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Cba_g17500	No alias	subfamily ABCG transporter & original description: none	0.01	OrthoFinder output from all 47 species
Dac_g08003	No alias	subfamily ABCG transporter & original description: none	0.02	OrthoFinder output from all 47 species
Dcu_g10068	No alias	subfamily ABCG transporter & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01022346001	No alias	ABC transporter G family member 5 OS=Arabidopsis thaliana	0.01	OrthoFinder output from all 47 species
GSVIVT01037274001	No alias	Solute transport.primary active transport.ABC...	0.01	OrthoFinder output from all 47 species
LOC_Os03g17350.1	LOC_Os03g17350	subfamily ABCG transporter	0.01	OrthoFinder output from all 47 species
LOC_Os05g31910.2	LOC_Os05g31910	subfamily ABCG transporter	0.04	OrthoFinder output from all 47 species
Lfl_g39649	No alias	subfamily ABCG transporter & original description: none	0.01	OrthoFinder output from all 47 species
Mp2g07990.1	No alias	subfamily ABCG transporter	0.01	OrthoFinder output from all 47 species
Ppi_g31857	No alias	subfamily ABCG transporter & original description: none	0.01	OrthoFinder output from all 47 species
Solyc03g007690.1.1	Solyc03g007690	subfamily ABCG transporter	0.02	OrthoFinder output from all 47 species
Solyc03g113690.1.1	Solyc03g113690	subfamily ABCG transporter	0.01	OrthoFinder output from all 47 species
Spa_g29782	No alias	subfamily ABCG transporter & original description: none	0.01	OrthoFinder output from all 47 species
Tin_g11561	No alias	subfamily ABCG transporter & original description: none	0.02	OrthoFinder output from all 47 species
Tin_g44760	No alias	subfamily ABCG transporter & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e001269_P001	Zm00001e001269	subfamily ABCG transporter	0.01	OrthoFinder output from all 47 species
Zm00001e027604_P001	Zm00001e027604	subfamily ABCG transporter	0.04	OrthoFinder output from all 47 species
Zm00001e031556_P001	Zm00001e031556	subfamily ABCG transporter	0.01	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0016020	membrane	IEA	Interproscan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0016887	ATP hydrolysis activity	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000796	condensin complex	IEP	HCCA
BP	GO:0006996	organelle organization	IEP	HCCA
BP	GO:0007076	mitotic chromosome condensation	IEP	HCCA
BP	GO:0016043	cellular component organization	IEP	HCCA
MF	GO:0016788	hydrolase activity, acting on ester bonds	IEP	HCCA
BP	GO:0022402	cell cycle process	IEP	HCCA
BP	GO:0030261	chromosome condensation	IEP	HCCA
CC	GO:0044815	DNA packaging complex	IEP	HCCA
BP	GO:0051276	chromosome organization	IEP	HCCA
BP	GO:0071840	cellular component organization or biogenesis	IEP	HCCA
BP	GO:1903047	mitotic cell cycle process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003439	ABC_transporter-like_ATP-bd	159	311
IPR013525	ABC_2_trans	484	692

External Links

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Pp3c9_18880V3.1 (Pp3c9_18880)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation