Description : Probable E3 ubiquitin-protein ligase RHY1A OS=Arabidopsis thaliana (sp|q852u6|rhy1a_arath : 80.1)
Gene families : OG0000957 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000957_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: MA_10426524g0010 | |
| Cluster | HCCA: Cluster_86 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT1G49850 | No alias | RING/U-box superfamily protein | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g112268 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g06279 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g63256 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Dcu_g45444 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Gb_19820 | No alias | no hits & (original description: none) | 0.06 | OrthoFinder output from all 47 species | |
| LOC_Os11g37230.1 | LOC_Os11g37230 | no hits & (original description: none) | 0.04 | OrthoFinder output from all 47 species | |
| Len_g11294 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ore_g07226 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pir_g28901 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Pir_g30129 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ppi_g63326 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0006.g002945 | No alias | not classified & original description: CDS=1-861 | 0.03 | OrthoFinder output from all 47 species | |
| Solyc07g007170.3.1 | Solyc07g007170 | no hits & (original description: none) | 0.06 | OrthoFinder output from all 47 species | |
| Spa_g02703 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003674 | molecular_function | IEP | HCCA |
| MF | GO:0003677 | DNA binding | IEP | HCCA |
| MF | GO:0003700 | DNA-binding transcription factor activity | IEP | HCCA |
| MF | GO:0005488 | binding | IEP | HCCA |
| BP | GO:0006355 | regulation of DNA-templated transcription | IEP | HCCA |
| BP | GO:0009889 | regulation of biosynthetic process | IEP | HCCA |
| BP | GO:0010468 | regulation of gene expression | IEP | HCCA |
| BP | GO:0010556 | regulation of macromolecule biosynthetic process | IEP | HCCA |
| BP | GO:0019219 | regulation of nucleobase-containing compound metabolic process | IEP | HCCA |
| BP | GO:0019222 | regulation of metabolic process | IEP | HCCA |
| MF | GO:0030246 | carbohydrate binding | IEP | HCCA |
| BP | GO:0031323 | regulation of cellular metabolic process | IEP | HCCA |
| BP | GO:0031326 | regulation of cellular biosynthetic process | IEP | HCCA |
| MF | GO:0043565 | sequence-specific DNA binding | IEP | HCCA |
| BP | GO:0051171 | regulation of nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0051252 | regulation of RNA metabolic process | IEP | HCCA |
| BP | GO:0060255 | regulation of macromolecule metabolic process | IEP | HCCA |
| BP | GO:0080090 | regulation of primary metabolic process | IEP | HCCA |
| MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
| MF | GO:0140110 | transcription regulator activity | IEP | HCCA |
| MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
| BP | GO:1903506 | regulation of nucleic acid-templated transcription | IEP | HCCA |
| BP | GO:2001141 | regulation of RNA biosynthetic process | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR001841 | Znf_RING | 299 | 341 |
| No external refs found! |
