MA_10431312g0020

Description : component RPP3 of LSU proteome component. component RPS19 of SSU proteome

Gene families : OG0003859 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003859_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: MA_10431312g0020

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00025p00182570	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.15	OrthoFinder output from all 47 species
AT4G25890	No alias	60S acidic ribosomal protein family	0.17	OrthoFinder output from all 47 species
AT5G57290	No alias	60S acidic ribosomal protein family	0.2	OrthoFinder output from all 47 species
Adi_g053256	No alias	component *(RPP3) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Adi_g124944	No alias	component *(RPP3) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Aev_g06306	No alias	component *(RPP3) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Ala_g10658	No alias	component *(RPP3) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Ala_g35024	No alias	component *(RPP3) of large ribosomal-subunit (LSU)...	0.09	OrthoFinder output from all 47 species
Aop_g41418	No alias	component *(RPP3) of large ribosomal-subunit (LSU)...	0.09	OrthoFinder output from all 47 species
Aspi01Gene65687.t1	Aspi01Gene65687	component *(RPP3) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Azfi_s0393.g067832	No alias	component *(RPP3) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Cba_g20552	No alias	component *(RPP3) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Ceric.24G014300.1	Ceric.24G014300	component *(RPP3) of large ribosomal-subunit (LSU)...	0.07	OrthoFinder output from all 47 species
Dac_g46270	No alias	component *(RPP3) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Dac_g46271	No alias	component *(RPP3) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Dcu_g19693	No alias	component *(RPP3) of large ribosomal-subunit (LSU)...	0.07	OrthoFinder output from all 47 species
GSVIVT01010910001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.18	OrthoFinder output from all 47 species
Gb_31564	No alias	component RPP3 of LSU proteome component	0.14	OrthoFinder output from all 47 species
LOC_Os01g13080.1	LOC_Os01g13080	component RPP3 of LSU proteome component	0.05	OrthoFinder output from all 47 species
LOC_Os06g48780.1	LOC_Os06g48780	component RPP3 of LSU proteome component	0.07	OrthoFinder output from all 47 species
Len_g49119	No alias	component *(RPP3) of large ribosomal-subunit (LSU)...	0.07	OrthoFinder output from all 47 species
Len_g58897	No alias	component *(RPP3) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Lfl_g04514	No alias	component *(RPP3) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Lfl_g28349	No alias	component *(RPP3) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Mp3g07010.1	No alias	component RPP3 of LSU proteome component	0.1	OrthoFinder output from all 47 species
Nbi_g01622	No alias	component *(RPP3) of large ribosomal-subunit (LSU)...	0.09	OrthoFinder output from all 47 species
Pir_g18566	No alias	component *(RPP3) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Pp3c21_16160V3.1	Pp3c21_16160	60S acidic ribosomal protein family	0.1	OrthoFinder output from all 47 species
Sacu_v1.1_s0014.g006166	No alias	component *(RPP3) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Sam_g24981	No alias	component *(RPP3) of large ribosomal-subunit (LSU)...	0.11	OrthoFinder output from all 47 species
Smo105823	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.08	OrthoFinder output from all 47 species
Solyc07g009330.4.1	Solyc07g009330	component RPP3 of LSU proteome component	0.23	OrthoFinder output from all 47 species
Spa_g04803	No alias	component *(RPP3) of large ribosomal-subunit (LSU)...	0.14	OrthoFinder output from all 47 species
Spa_g17718	No alias	component *(RPP3) of large ribosomal-subunit (LSU)...	0.12	OrthoFinder output from all 47 species
Tin_g00251	No alias	component *(RPP3) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Zm00001e013180_P001	Zm00001e013180	component RPP3 of LSU proteome component	0.12	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003723	RNA binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001266	Ribosomal_S19e	31	83

External Links

No external refs found!

MA_10431312g0020

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation