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  5. MA_10432683g0010

MA_10432683g0010


Description : Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana (sp|q8w034|rnp1_arath : 240.0)


Gene families : OG0000120 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000120_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_10432683g0010

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00049p00200350 evm_27.TU.AmTr_v1... Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.06 OrthoFinder output from all 47 species
AMTR_s00061p00188860 evm_27.TU.AmTr_v1... Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AMTR_s00067p00185510 evm_27.TU.AmTr_v1... Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.06 OrthoFinder output from all 47 species
AT2G33410 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.03 OrthoFinder output from all 47 species
AT5G40490 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.03 OrthoFinder output from all 47 species
Adi_g054784 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g060246 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g102181 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g05289 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g26133 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g12260 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g08667 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g12817 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g14658 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene41903.t1 Aspi01Gene41903 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0015.g013740 No alias not classified & original description: CDS=1-1461 0.04 OrthoFinder output from all 47 species
Azfi_s0149.g053226 No alias not classified & original description: CDS=547-1935 0.03 OrthoFinder output from all 47 species
Azfi_s0195.g057243 No alias not classified & original description: CDS=263-1516 0.03 OrthoFinder output from all 47 species
Cba_g02546 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g15471 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g33385 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g76606 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.19G061100.1 Ceric.19G061100 not classified & original description: pacid=50575703... 0.06 OrthoFinder output from all 47 species
Ceric.24G054300.1 Ceric.24G054300 not classified & original description: pacid=50629415... 0.03 OrthoFinder output from all 47 species
Ceric.30G049700.1 Ceric.30G049700 not classified & original description: pacid=50608801... 0.03 OrthoFinder output from all 47 species
Ceric.35G060600.1 Ceric.35G060600 not classified & original description: pacid=50581737... 0.04 OrthoFinder output from all 47 species
Dac_g01601 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g03669 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g04644 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g16933 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01012784001 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
GSVIVT01028394001 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
GSVIVT01032402001 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Gb_29426 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Gb_35079 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Gb_39961 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
LOC_Os02g12850.1 LOC_Os02g12850 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Len_g09242 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Len_g13554 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Len_g45356 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g43133 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g19415 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g19973 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g40736 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g00523 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g05992 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g05996 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g09717 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g14102 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g17780 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g20108 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g02420 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g29827 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g15340 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g37589 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g42376 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g42383 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo101375 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Solyc02g093340.3.1 Solyc02g093340 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.06 OrthoFinder output from all 47 species
Solyc03g005680.3.1 Solyc03g005680 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.06 OrthoFinder output from all 47 species
Solyc03g121710.2.1 Solyc03g121710 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Solyc07g045240.3.1 Solyc07g045240 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Solyc09g090520.3.1 Solyc09g090520 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Spa_g11285 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g21542 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g57176 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g07867 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e002844_P001 Zm00001e002844 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Zm00001e012709_P005 Zm00001e012709 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Zm00001e014461_P003 Zm00001e014461 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Zm00001e024336_P003 Zm00001e024336 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Zm00001e024934_P002 Zm00001e024934 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Zm00001e030652_P001 Zm00001e030652 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
Zm00001e037155_P004 Zm00001e037155 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
CC GO:0019867 outer membrane IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 115 172
IPR000504 RRM_dom 8 65
No external refs found!