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  5. MA_10435699g0010

MA_10435699g0010


Description : component RPS27a of SSU proteome


Gene families : OG0000054 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_10435699g0010
Cluster HCCA: Cluster_38

Target Alias Description ECC score Gene Family Method Actions
AT1G11980 RUB3 ubiquitin-related protein 3 0.03 OrthoFinder output from all 47 species
Als_g31640 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g21615 UBQ14 UBQ ubiquitin-fold protein & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene08346.t1 UBQ11, Aspi01Gene08346 UBQ ubiquitin-fold protein & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene18514.t1 UBQ11, Aspi01Gene18514 UBQ ubiquitin-fold protein & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene23135.t1 UBQ11, Aspi01Gene23135 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g08633 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g43648 RUB1, ATRUB1, NEDD8 RUB ubiquitin-fold protein & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.05G024100.1 UBQ11, Ceric.05G024100 UBQ ubiquitin-fold protein & original description:... 0.01 OrthoFinder output from all 47 species
Ceric.29G038100.1 UBQ11, Ceric.29G038100 not classified & original description: pacid=50625725... 0.01 OrthoFinder output from all 47 species
Dcu_g43281 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.01 OrthoFinder output from all 47 species
LOC_Os09g31031.1 LOC_Os09g31031 Ubiquitin-40S ribosomal protein S27a OS=Solanum... 0.02 OrthoFinder output from all 47 species
MA_382859g0010 UBQ11 Polyubiquitin (Fragment) OS=Hordeum vulgare... 0.02 OrthoFinder output from all 47 species
Nbi_g44239 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g04047 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g26909 UBQ11 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g60011 UBQ6 component *(eS31) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Tin_g46338 UBQ14 UBQ ubiquiTin-fold protein & original description: none 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000012 single strand break repair IEP HCCA
MF GO:0003684 damaged DNA binding IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0008037 cell recognition IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0048544 recognition of pollen IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR002906 Ribosomal_S27a 107 152
IPR000626 Ubiquitin-like_dom 8 79
No external refs found!