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  5. MA_10436125g0020

MA_10436125g0020 (ATTRB1, TRB1)


Aliases : ATTRB1, TRB1

Description : linker histone (H1)


Gene families : OG0000310 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000310_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_10436125g0020
Cluster HCCA: Cluster_22

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00264270 evm_27.TU.AmTr_v1... Chromatin organisation.histones.H1 linker histone 0.03 OrthoFinder output from all 47 species
AT1G06760 No alias winged-helix DNA-binding transcription factor family protein 0.03 OrthoFinder output from all 47 species
Adi_g052669 No alias linker histone *(H1) & original description: none 0.05 OrthoFinder output from all 47 species
Aev_g31757 HIS1-3 linker histone *(H1) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g09382 HIS1-3 linker histone *(H1) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g30809 HIS1-3 linker histone *(H1) & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g36461 HIS1-3 linker histone *(H1) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene11879.t1 HIS1-3, Aspi01Gene11879 linker histone *(H1) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene11880.t1 HIS1-3, Aspi01Gene11880 linker histone *(H1) & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0049.g030788 No alias linker histone *(H1) & original description: CDS=1-786 0.03 OrthoFinder output from all 47 species
Ceric.05G101000.1 HIS1-3, Ceric.05G101000 linker histone *(H1) & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.17G067800.1 HIS1-3, Ceric.17G067800 linker histone *(H1) & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.30G041600.1 Ceric.30G041600 linker histone *(H1) & original description:... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020780.71 HIS1-3 No description available 0.02 OrthoFinder output from all 47 species
Cre13.g567450 HIS1-3 Chromatin organisation.histones.H1 linker histone 0.05 OrthoFinder output from all 47 species
Dac_g20797 HIS1-3 linker histone *(H1) & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g02558 HIS1-3 linker histone *(H1) & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g23302 No alias linker histone *(H1) & original description: none 0.03 OrthoFinder output from all 47 species
Gb_02738 No alias linker histone (H1) 0.06 OrthoFinder output from all 47 species
LOC_Os04g18090.1 HIS1-3, LOC_Os04g18090 linker histone (H1) 0.03 OrthoFinder output from all 47 species
LOC_Os07g08710.1 LOC_Os07g08710 linker histone (H1) 0.03 OrthoFinder output from all 47 species
Len_g23782 HIS1-3 linker histone *(H1) & original description: none 0.02 OrthoFinder output from all 47 species
MA_11137g0010 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Mp6g03150.1 HIS1-3 linker histone (H1) 0.03 OrthoFinder output from all 47 species
Msp_g09818 HIS1-3 linker histone *(H1) & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g25816 No alias linker histone *(H1) & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g11041 No alias linker histone *(H1) & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g11042 No alias linker histone *(H1) & original description: none 0.03 OrthoFinder output from all 47 species
Solyc09g066100.3.1 Solyc09g066100 linker histone (H1) 0.05 OrthoFinder output from all 47 species
Solyc09g083380.4.1 Solyc09g083380 linker histone (H1) 0.05 OrthoFinder output from all 47 species
Spa_g09323 HIS1-3 linker histone *(H1) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g09324 HIS1-3 linker histone *(H1) & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g31027 HIS1-3 linker histone *(H1) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g50934 HIS1-3 linker histone *(H1) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g50935 HIS1-3 linker histone *(H1) & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g01715 HIS1-3 linker histone *(H1) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e006018_P006 Zm00001e006018 linker histone (H1) 0.04 OrthoFinder output from all 47 species
Zm00001e007189_P001 HIS1-3, Zm00001e007189 linker histone (H1) 0.05 OrthoFinder output from all 47 species
Zm00001e011857_P001 Zm00001e011857 linker histone (H1) 0.04 OrthoFinder output from all 47 species
Zm00001e011859_P001 Zm00001e011859 linker histone (H1) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
BP GO:0006334 nucleosome assembly IEA Interproscan
CC GO:0042025 host cell nucleus IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR005818 Histone_H1/H5_H15 62 120
No external refs found!