1. Home
  2. Species
  3. Picea abies
  4. Sequence
  5. MA_10437243g0020

MA_10437243g0020 (DCL1, CAF, EMB76,...)


Aliases : DCL1, CAF, EMB76, SIN1, ATDCL1, EMB60, SUS1, ASU1

Description : Endoribonuclease Dicer homolog 1 OS=Arabidopsis thaliana (sp|q9sp32|dcl1_arath : 1093.0)


Gene families : OG0000378 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000378_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_10437243g0020
Cluster HCCA: Cluster_25

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00018p00015000 DCL1, CAF,... RNA biosynthesis.siRNA biogenesis.DCL-type endoribonuclease 0.02 OrthoFinder output from all 47 species
AT1G01040 DCL1, CAF,... dicer-like 1 0.11 OrthoFinder output from all 47 species
AT3G03300 ATDCL2, DCL2 dicer-like 2 0.03 OrthoFinder output from all 47 species
AT5G20320 DCL4, ATDCL4 dicer-like 4 0.07 OrthoFinder output from all 47 species
Adi_g017408 DCL1, CAF,... endoribonuclease component *(DCL1) of DCL1-HYL1 miRNA... 0.03 OrthoFinder output from all 47 species
Adi_g022447 DCL1, CAF,... endoribonuclease (DCL4) of transacting siRNA pathway &... 0.03 OrthoFinder output from all 47 species
Aev_g13800 DCL1, CAF,... endoribonuclease (DCL2) of transacting siRNA pathway &... 0.03 OrthoFinder output from all 47 species
Ala_g13307 DCL1, CAF,... endoribonuclease component *(DCL1) of DCL1-HYL1 miRNA... 0.03 OrthoFinder output from all 47 species
Als_g22807 DCL1, CAF,... endoribonuclease component *(DCL1) of DCL1-HYL1 miRNA... 0.04 OrthoFinder output from all 47 species
Aop_g06264 DCL1, CAF,... endoribonuclease component *(DCL1) of DCL1-HYL1 miRNA... 0.09 OrthoFinder output from all 47 species
Aop_g31318 DCL4, ATDCL4 endoribonuclease (DCL4) of transacting siRNA pathway &... 0.04 OrthoFinder output from all 47 species
Aspi01Gene32281.t1 DCL4, ATDCL4,... endoribonuclease (DCL4) of transacting siRNA pathway &... 0.04 OrthoFinder output from all 47 species
Aspi01Gene59762.t1 DCL1, CAF,... endoribonuclease component *(DCL1) of DCL1-HYL1 miRNA... 0.02 OrthoFinder output from all 47 species
Ceric.01G108700.1 DCL4, ATDCL4,... endoribonuclease (DCL4) of transacting siRNA pathway &... 0.07 OrthoFinder output from all 47 species
Ceric.1Z277300.1 DCL1, CAF,... not classified & original description: pacid=50600427... 0.02 OrthoFinder output from all 47 species
Ceric.22G041000.1 DCL1, CAF,... endoribonuclease component *(DCL1) of DCL1-HYL1 miRNA... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000741.30 DCL1, CAF,... No description available 0.01 OrthoFinder output from all 47 species
Cre02.g141000 DCL1, CAF,... Endoribonuclease Dicer homolog 1 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Cre07.g345900 DCL1, CAF,... No description available 0.03 OrthoFinder output from all 47 species
Dcu_g13692 DCL1, CAF,... endoribonuclease (DCL2) of transacting siRNA pathway &... 0.09 OrthoFinder output from all 47 species
Dcu_g36083 DCL4, ATDCL4 endoribonuclease (DCL4) of transacting siRNA pathway &... 0.04 OrthoFinder output from all 47 species
GSVIVT01035494001 ATDCL3, DCL3 RNA biosynthesis.siRNA biogenesis.DCL-type endoribonuclease 0.03 OrthoFinder output from all 47 species
Gb_34257 DCL4, ATDCL4 Endoribonuclease Dicer homolog 4 OS=Oryza sativa subsp.... 0.07 OrthoFinder output from all 47 species
LOC_Os01g68120.1 ATDCL3, DCL3,... endoribonuclease (DCL3) 0.03 OrthoFinder output from all 47 species
LOC_Os03g02970.1 DCL1, CAF,... endoribonuclease component DCL1 of DCL1-HYL1 miRNA... 0.02 OrthoFinder output from all 47 species
LOC_Os04g43050.1 DCL4, ATDCL4,... endoribonuclease (DCL4) 0.05 OrthoFinder output from all 47 species
Lfl_g03508 DCL4, ATDCL4 endoribonuclease (DCL4) of transacting siRNA pathway &... 0.03 OrthoFinder output from all 47 species
Lfl_g06763 DCL1, CAF,... endoribonuclease component *(DCL1) of DCL1-HYL1 miRNA... 0.03 OrthoFinder output from all 47 species
MA_10432726g0010 DCL1, CAF,... Endoribonuclease Dicer homolog 1 OS=Oryza sativa subsp.... 0.07 OrthoFinder output from all 47 species
Ore_g16091 DCL1, CAF,... endoribonuclease component *(DCL1) of DCL1-HYL1 miRNA... 0.06 OrthoFinder output from all 47 species
Sacu_v1.1_s0021.g008352 ATDCL3, DCL3 endoribonuclease (DCL2) of transacting siRNA pathway &... 0.03 OrthoFinder output from all 47 species
Smo444049 DCL1, CAF,... RNA biosynthesis.siRNA biogenesis.DCL-type endoribonuclease 0.02 OrthoFinder output from all 47 species
Smo74321 DCL4, ATDCL4 RNA biosynthesis.siRNA biogenesis.DCL-type endoribonuclease 0.02 OrthoFinder output from all 47 species
Smo86110 DCL1, CAF,... RNA biosynthesis.siRNA biogenesis.DCL-type endoribonuclease 0.03 OrthoFinder output from all 47 species
Solyc07g005030.4.1 DCL4, ATDCL4,... endoribonuclease (DCL4). component DRB7 of DRB4-DRB7.1... 0.03 OrthoFinder output from all 47 species
Spa_g28946 DCL1, CAF,... endoribonuclease *(DCL3) & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g25551 DCL1, CAF,... endoribonuclease component *(DCL1) of DCL1-HYL1 miRNA... 0.02 OrthoFinder output from all 47 species
Tin_g29214 DCL4, ATDCL4 endoribonuclease (DCL4) of transacTing siRNA pathway &... 0.04 OrthoFinder output from all 47 species
Zm00001e000158_P001 DCL1, CAF,... endoribonuclease component DCL1 of DCL1-HYL1 miRNA... 0.02 OrthoFinder output from all 47 species
Zm00001e018890_P004 ATDCL3, DCL3,... endoribonuclease (DCL3) 0.06 OrthoFinder output from all 47 species
Zm00001e041209_P001 DCL4, ATDCL4,... endoribonuclease (DCL4). component DRB7 of DRB4-DRB7.1... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0016787 hydrolase activity IEA Interproscan
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004525 ribonuclease III activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR005034 Dicer_dimerisation_dom 1056 1129
IPR001650 Helicase_C 864 981
IPR006935 Helicase/UvrB_N 461 628
No external refs found!