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  5. MA_108060g0010

MA_108060g0010 (DCL1, CAF, EMB76,...)


Aliases : DCL1, CAF, EMB76, SIN1, ATDCL1, EMB60, SUS1, ASU1

Description : Endoribonuclease Dicer homolog 3a OS=Oryza sativa subsp. japonica (sp|q5n870|dcl3a_orysj : 287.0)


Gene families : OG0000378 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000378_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_108060g0010
Cluster HCCA: Cluster_245

Target Alias Description ECC score Gene Family Method Actions
Als_g09756 DCL1, CAF,... endoribonuclease (DCL2) of transacting siRNA pathway &... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000741.30 DCL1, CAF,... No description available 0.02 OrthoFinder output from all 47 species
Cre07.g345900 DCL1, CAF,... No description available 0.01 OrthoFinder output from all 47 species
GSVIVT01019052001 ATDCL2, DCL2 RNA biosynthesis.siRNA biogenesis.DCL-type endoribonuclease 0.05 OrthoFinder output from all 47 species
Gb_34257 DCL4, ATDCL4 Endoribonuclease Dicer homolog 4 OS=Oryza sativa subsp.... 0.05 OrthoFinder output from all 47 species
Nbi_g07904 DCL4, ATDCL4 endoribonuclease (DCL4) of transacting siRNA pathway &... 0.04 OrthoFinder output from all 47 species
Pir_g33927 ATDCL2, DCL2 endoribonuclease (DCL2) of transacting siRNA pathway &... 0.03 OrthoFinder output from all 47 species
Solyc08g067210.3.1 ATDCL3, DCL3,... endoribonuclease (DCL3) 0.03 OrthoFinder output from all 47 species
Zm00001e000158_P001 DCL1, CAF,... endoribonuclease component DCL1 of DCL1-HYL1 miRNA... 0.03 OrthoFinder output from all 47 species
Zm00001e018890_P004 ATDCL3, DCL3,... endoribonuclease (DCL3) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0016787 hydrolase activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000271 polysaccharide biosynthetic process IEP HCCA
CC GO:0000786 nucleosome IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0006073 cellular glucan metabolic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009250 glucan biosynthetic process IEP HCCA
BP GO:0016051 carbohydrate biosynthetic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016759 cellulose synthase activity IEP HCCA
MF GO:0016760 cellulose synthase (UDP-forming) activity IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0030243 cellulose metabolic process IEP HCCA
BP GO:0030244 cellulose biosynthetic process IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
CC GO:0032993 protein-DNA complex IEP HCCA
BP GO:0033692 cellular polysaccharide biosynthetic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034637 cellular carbohydrate biosynthetic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
MF GO:0035251 UDP-glucosyltransferase activity IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044042 glucan metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044262 cellular carbohydrate metabolic process IEP HCCA
BP GO:0044264 cellular polysaccharide metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
CC GO:0044815 DNA packaging complex IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0046527 glucosyltransferase activity IEP HCCA
BP GO:0051273 beta-glucan metabolic process IEP HCCA
BP GO:0051274 beta-glucan biosynthetic process IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR006935 Helicase/UvrB_N 95 247
No external refs found!