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  5. MA_141102g0010

MA_141102g0010


Description : Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana (sp|q8w034|rnp1_arath : 154.0)


Gene families : OG0000120 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000120_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_141102g0010

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00049p00200350 evm_27.TU.AmTr_v1... Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.06 OrthoFinder output from all 47 species
AMTR_s00065p00083440 evm_27.TU.AmTr_v1... Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.07 OrthoFinder output from all 47 species
AMTR_s00067p00185510 evm_27.TU.AmTr_v1... Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.06 OrthoFinder output from all 47 species
AT2G33410 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.02 OrthoFinder output from all 47 species
Aev_g05289 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g47700 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g02388 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g02499 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g12260 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g12261 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g21475 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g04352 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g08667 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g11244 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aspi01Gene42378.t1 Aspi01Gene42378 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0015.g013740 No alias not classified & original description: CDS=1-1461 0.03 OrthoFinder output from all 47 species
Cba_g02546 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g09256 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g15471 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g15473 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.04G042300.1 Ceric.04G042300 not classified & original description: pacid=50630995... 0.03 OrthoFinder output from all 47 species
Ceric.19G061100.1 Ceric.19G061100 not classified & original description: pacid=50575703... 0.02 OrthoFinder output from all 47 species
Ceric.24G054300.1 Ceric.24G054300 not classified & original description: pacid=50629415... 0.05 OrthoFinder output from all 47 species
Ceric.35G060600.1 Ceric.35G060600 not classified & original description: pacid=50581737... 0.05 OrthoFinder output from all 47 species
Dac_g01601 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g04645 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g15425 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g03669 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g07789 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g16051 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g16526 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g16527 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g16933 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g27370 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01016872001 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Gb_29426 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Gb_29428 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Gb_39961 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
LOC_Os10g33230.1 LOC_Os10g33230 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
Len_g02314 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g03813 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g09242 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g13554 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g22115 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g22774 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ore_g19415 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g19973 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g31234 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g00523 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g05992 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g05996 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g09717 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g14102 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g17780 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g20108 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g05151 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g05225 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g10456 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g25944 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g37452 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc02g093340.3.1 Solyc02g093340 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Solyc03g005680.3.1 Solyc03g005680 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Solyc03g121710.2.1 Solyc03g121710 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Solyc07g045240.3.1 Solyc07g045240 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Solyc09g090520.3.1 Solyc09g090520 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
Spa_g11285 No alias not classified & original description: none 0.09 OrthoFinder output from all 47 species
Spa_g21333 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g21542 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g30731 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g57176 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e014461_P003 Zm00001e014461 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Zm00001e024336_P003 Zm00001e024336 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
Zm00001e024934_P002 Zm00001e024934 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Zm00001e030652_P001 Zm00001e030652 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Zm00001e037155_P004 Zm00001e037155 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 44 111
IPR000504 RRM_dom 131 198
No external refs found!