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  5. MA_16917g0010

MA_16917g0010


Description : Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana (sp|q9svp7|pp307_arath : 601.0)


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_16917g0010
Cluster HCCA: Cluster_42

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00170p00032020 OTP86,... Pentatricopeptide repeat-containing protein At5g16860... 0.03 OrthoFinder output from all 47 species
AT1G56570 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT2G44880 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.03 OrthoFinder output from all 47 species
AT3G05340 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from all 47 species
AT3G13770 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 OrthoFinder output from all 47 species
AT4G39952 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
AT5G27110 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g005761 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g021679 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g034320 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g035023 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g035637 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g036747 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g055824 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g088950 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g089076 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g100785 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g27290 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g05272 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.06G074600.1 Ceric.06G074600 not classified & original description: pacid=50619733... 0.04 OrthoFinder output from all 47 species
Ceric.28G027300.1 CRR22, Ceric.28G027300 not classified & original description: pacid=50569783... 0.04 OrthoFinder output from all 47 species
Dcu_g26818 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Gb_00852 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.04 OrthoFinder output from all 47 species
Gb_02065 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 OrthoFinder output from all 47 species
Gb_02194 REME1 Pentatricopeptide repeat-containing protein At1g11290,... 0.11 OrthoFinder output from all 47 species
Gb_03221 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.05 OrthoFinder output from all 47 species
Gb_03474 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species
Gb_03512 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
Gb_03579 No alias RNA editing factor (MEF12) 0.03 OrthoFinder output from all 47 species
Gb_03631 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.06 OrthoFinder output from all 47 species
Gb_04091 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.05 OrthoFinder output from all 47 species
Gb_04381 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.05 OrthoFinder output from all 47 species
Gb_04419 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.09 OrthoFinder output from all 47 species
Gb_04450 CRR2 OTP70 plastidial RNA splicing factor 0.05 OrthoFinder output from all 47 species
Gb_04785 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.07 OrthoFinder output from all 47 species
Gb_04828 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.03 OrthoFinder output from all 47 species
Gb_04844 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species
Gb_05116 CRR22 RNA editing factor (OTP82) 0.05 OrthoFinder output from all 47 species
Gb_05127 No alias Pentatricopeptide repeat-containing protein At3g26540... 0.04 OrthoFinder output from all 47 species
Gb_05264 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.07 OrthoFinder output from all 47 species
Gb_05488 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.06 OrthoFinder output from all 47 species
Gb_06173 OTP84 Pentatricopeptide repeat-containing protein DOT4,... 0.05 OrthoFinder output from all 47 species
Gb_06568 REME1 Pentatricopeptide repeat-containing protein At2g03880,... 0.09 OrthoFinder output from all 47 species
Gb_06899 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 OrthoFinder output from all 47 species
Gb_07723 OTP84 RNA editing factor (OTP82) 0.07 OrthoFinder output from all 47 species
Gb_07756 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.05 OrthoFinder output from all 47 species
Gb_08029 CRR22 Pentatricopeptide repeat-containing protein At4g02750... 0.07 OrthoFinder output from all 47 species
Gb_08053 OTP84 Pentatricopeptide repeat-containing protein At3g57430,... 0.1 OrthoFinder output from all 47 species
Gb_08253 REME1 RNA editing factor (OTP82) 0.07 OrthoFinder output from all 47 species
Gb_08560 OTP84 Pentatricopeptide repeat-containing protein At3g57430,... 0.04 OrthoFinder output from all 47 species
Gb_08618 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.12 OrthoFinder output from all 47 species
Gb_08619 No alias RNA editing factor (MEF19) 0.03 OrthoFinder output from all 47 species
Gb_08745 CRR22 RNA editing factor (OTP82) 0.05 OrthoFinder output from all 47 species
Gb_08964 CRR2 Pentatricopeptide repeat-containing protein At3g57430,... 0.04 OrthoFinder output from all 47 species
Gb_08968 CRR2 Pentatricopeptide repeat-containing protein At4g02750... 0.04 OrthoFinder output from all 47 species
Gb_09361 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.04 OrthoFinder output from all 47 species
Gb_09382 No alias Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
Gb_09654 No alias RNA editing factor (MEF13) 0.07 OrthoFinder output from all 47 species
Gb_10133 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.07 OrthoFinder output from all 47 species
Gb_10908 No alias Putative pentatricopeptide repeat-containing protein... 0.05 OrthoFinder output from all 47 species
Gb_10922 VAC1, ECB2, ATECB2 Pentatricopeptide repeat-containing protein At3g09040,... 0.1 OrthoFinder output from all 47 species
Gb_10985 OTP84 Pentatricopeptide repeat-containing protein At2g22070... 0.06 OrthoFinder output from all 47 species
Gb_11222 No alias Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
Gb_11581 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.07 OrthoFinder output from all 47 species
Gb_12240 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.03 OrthoFinder output from all 47 species
Gb_13227 VAC1, ECB2, ATECB2 Pentatricopeptide repeat-containing protein At2g27610... 0.05 OrthoFinder output from all 47 species
Gb_13369 No alias RNA editing factor (MEF12) 0.08 OrthoFinder output from all 47 species
Gb_14459 No alias Putative pentatricopeptide repeat-containing protein... 0.07 OrthoFinder output from all 47 species
Gb_15235 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 OrthoFinder output from all 47 species
Gb_15507 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.05 OrthoFinder output from all 47 species
Gb_15639 CRR22 Pentatricopeptide repeat-containing protein At4g02750... 0.03 OrthoFinder output from all 47 species
Gb_15643 CRR22 Pentatricopeptide repeat-containing protein At4g02750... 0.06 OrthoFinder output from all 47 species
Gb_15874 CRR22 RNA editing factor (ECB2/VAC1) 0.06 OrthoFinder output from all 47 species
Gb_16070 CRR22 Pentatricopeptide repeat-containing protein At2g27610... 0.03 OrthoFinder output from all 47 species
Gb_16288 CRR22 RNA editing factor (OTP82) 0.03 OrthoFinder output from all 47 species
Gb_17620 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 OrthoFinder output from all 47 species
Gb_18436 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.05 OrthoFinder output from all 47 species
Gb_18979 OTP84 Pentatricopeptide repeat-containing protein At4g02750... 0.06 OrthoFinder output from all 47 species
Gb_19828 No alias RNA editing factor (OTP82) 0.03 OrthoFinder output from all 47 species
Gb_20456 No alias Pentatricopeptide repeat-containing protein At3g24000,... 0.06 OrthoFinder output from all 47 species
Gb_21064 CRR22 RNA editing factor (OTP82) 0.04 OrthoFinder output from all 47 species
Gb_21237 REME1 Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
Gb_21441 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.06 OrthoFinder output from all 47 species
Gb_21442 CRR22 Pentatricopeptide repeat-containing protein At3g12770... 0.03 OrthoFinder output from all 47 species
Gb_22613 CRR22 Pentatricopeptide repeat-containing protein At2g27610... 0.08 OrthoFinder output from all 47 species
Gb_22740 VAC1, ECB2, ATECB2 Pentatricopeptide repeat-containing protein At1g15510,... 0.08 OrthoFinder output from all 47 species
Gb_22769 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.12 OrthoFinder output from all 47 species
Gb_23320 CRR22 RNA editing factor (OTP82) 0.05 OrthoFinder output from all 47 species
Gb_23605 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.06 OrthoFinder output from all 47 species
Gb_23924 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.07 OrthoFinder output from all 47 species
Gb_23934 OTP84 Pentatricopeptide repeat-containing protein At3g12770... 0.03 OrthoFinder output from all 47 species
Gb_24515 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.07 OrthoFinder output from all 47 species
Gb_24755 CRR22 RNA editing factor (MEF19). RNA editing factor (OTP82) 0.04 OrthoFinder output from all 47 species
Gb_25283 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species
Gb_25737 MEF1 RNA editing factor (MEF1) 0.05 OrthoFinder output from all 47 species
Gb_26155 CRR2 Pentatricopeptide repeat-containing protein At3g46790,... 0.03 OrthoFinder output from all 47 species
Gb_26723 OTP84 Pentatricopeptide repeat-containing protein At2g22070... 0.04 OrthoFinder output from all 47 species
Gb_26816 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.05 OrthoFinder output from all 47 species
Gb_27329 OTP84 Pentatricopeptide repeat-containing protein At3g57430,... 0.07 OrthoFinder output from all 47 species
Gb_27833 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.07 OrthoFinder output from all 47 species
Gb_27879 VAC1, ECB2, ATECB2 RNA editing factor (ECB2/VAC1) 0.05 OrthoFinder output from all 47 species
Gb_28279 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 OrthoFinder output from all 47 species
Gb_28612 LOI1, MEF11 RNA editing factor (MEF11) 0.07 OrthoFinder output from all 47 species
Gb_28762 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.12 OrthoFinder output from all 47 species
Gb_28765 REME1 Pentatricopeptide repeat-containing protein At4g02750... 0.05 OrthoFinder output from all 47 species
Gb_28770 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 OrthoFinder output from all 47 species
Gb_28780 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.04 OrthoFinder output from all 47 species
Gb_29028 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 OrthoFinder output from all 47 species
Gb_29543 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.07 OrthoFinder output from all 47 species
Gb_29868 CRR22 RNA editing factor (OTP82) 0.06 OrthoFinder output from all 47 species
Gb_29872 CRR22 RNA editing factor (MEF19). RNA editing factor (OTP82) 0.08 OrthoFinder output from all 47 species
Gb_29877 CRR22 RNA editing factor (OTP82) 0.04 OrthoFinder output from all 47 species
Gb_29879 CRR22 RNA editing factor (MEF19). RNA editing factor (OTP82) 0.07 OrthoFinder output from all 47 species
Gb_29990 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.05 OrthoFinder output from all 47 species
Gb_30004 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.06 OrthoFinder output from all 47 species
Gb_30732 No alias Pentatricopeptide repeat-containing protein At3g02330,... 0.06 OrthoFinder output from all 47 species
Gb_30942 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.07 OrthoFinder output from all 47 species
Gb_30991 No alias Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
Gb_31706 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.11 OrthoFinder output from all 47 species
Gb_31795 CRR22 Pentatricopeptide repeat-containing protein At2g13600... 0.07 OrthoFinder output from all 47 species
Gb_32051 REME1 Pentatricopeptide repeat-containing protein At4g02750... 0.06 OrthoFinder output from all 47 species
Gb_32077 OTP84 Pentatricopeptide repeat-containing protein At3g57430,... 0.04 OrthoFinder output from all 47 species
Gb_32451 CRR22 Pentatricopeptide repeat-containing protein At3g63370,... 0.04 OrthoFinder output from all 47 species
Gb_32452 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.03 OrthoFinder output from all 47 species
Gb_32455 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.06 OrthoFinder output from all 47 species
Gb_32456 CRR22 Pentatricopeptide repeat-containing protein At4g02750... 0.05 OrthoFinder output from all 47 species
Gb_32989 No alias Pentatricopeptide repeat-containing protein At3g49710... 0.06 OrthoFinder output from all 47 species
Gb_33070 CRR22 Pentatricopeptide repeat-containing protein At3g12770... 0.04 OrthoFinder output from all 47 species
Gb_33111 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.07 OrthoFinder output from all 47 species
Gb_33135 CRR22 Pentatricopeptide repeat-containing protein At4g13650... 0.04 OrthoFinder output from all 47 species
Gb_33367 No alias RNA editing factor (OTP82) 0.06 OrthoFinder output from all 47 species
Gb_33719 No alias RNA editing factor (OTP82) 0.08 OrthoFinder output from all 47 species
Gb_33726 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species
Gb_34963 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.05 OrthoFinder output from all 47 species
Gb_35258 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.05 OrthoFinder output from all 47 species
Gb_35395 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 OrthoFinder output from all 47 species
Gb_35599 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.03 OrthoFinder output from all 47 species
Gb_35786 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.06 OrthoFinder output from all 47 species
Gb_35793 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 OrthoFinder output from all 47 species
Gb_35886 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.04 OrthoFinder output from all 47 species
Gb_36168 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.04 OrthoFinder output from all 47 species
Gb_36178 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.04 OrthoFinder output from all 47 species
Gb_37102 OTP84 RNA editing factor (MEF19) 0.05 OrthoFinder output from all 47 species
Gb_37624 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.04 OrthoFinder output from all 47 species
Gb_38232 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.07 OrthoFinder output from all 47 species
Gb_38297 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.05 OrthoFinder output from all 47 species
Gb_38503 CRR22 Pentatricopeptide repeat-containing protein At4g02750... 0.05 OrthoFinder output from all 47 species
Gb_38751 No alias Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
Gb_40303 No alias Pentatricopeptide repeat-containing protein At3g24000,... 0.07 OrthoFinder output from all 47 species
Gb_40380 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.09 OrthoFinder output from all 47 species
Gb_40381 No alias Putative pentatricopeptide repeat-containing protein... 0.07 OrthoFinder output from all 47 species
Gb_40437 CRR22 RNA editing factor (MEF3) 0.05 OrthoFinder output from all 47 species
Gb_40472 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.04 OrthoFinder output from all 47 species
Gb_40680 CRR22 Pentatricopeptide repeat-containing protein At2g22070... 0.03 OrthoFinder output from all 47 species
Gb_40749 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.07 OrthoFinder output from all 47 species
Gb_41233 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
Gb_41341 CRR22 Pentatricopeptide repeat-containing protein DOT4,... 0.06 OrthoFinder output from all 47 species
Gb_41454 No alias Pentatricopeptide repeat-containing protein At4g18520,... 0.04 OrthoFinder output from all 47 species
Gb_41804 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.09 OrthoFinder output from all 47 species
MA_370961g0010 REME1 Pentatricopeptide repeat-containing protein At3g24000,... 0.03 OrthoFinder output from all 47 species
MA_445207g0010 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.04 OrthoFinder output from all 47 species
Msp_g04397 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g15422 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g17026 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g17737 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g19069 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g23181 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g28213 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g33344 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g35356 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g46079 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g43350 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo110016 No alias Pentatricopeptide repeat-containing protein At1g06140,... 0.03 OrthoFinder output from all 47 species
Smo136503 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 OrthoFinder output from all 47 species
Smo136851 CRR2 Pentatricopeptide repeat-containing protein At4g02750... 0.02 OrthoFinder output from all 47 species
Solyc01g110010.3.1 Solyc01g110010 Pentatricopeptide repeat-containing protein At1g74600,... 0.04 OrthoFinder output from all 47 species
Solyc12g042400.1.1 SLO1, Solyc12g042400 Pentatricopeptide repeat-containing protein At2g29760,... 0.03 OrthoFinder output from all 47 species
Zm00001e001038_P001 CRR2, Zm00001e001038 Pentatricopeptide repeat-containing protein At1g08070,... 0.03 OrthoFinder output from all 47 species
Zm00001e010182_P001 Zm00001e010182 Pentatricopeptide repeat-containing protein At2g36980,... 0.03 OrthoFinder output from all 47 species
Zm00001e011923_P001 Zm00001e011923 Pentatricopeptide repeat-containing protein At4g21300... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 2 20
IPR002885 Pentatricopeptide_repeat 400 425
IPR002885 Pentatricopeptide_repeat 501 526
IPR002885 Pentatricopeptide_repeat 601 626
IPR002885 Pentatricopeptide_repeat 426 473
IPR002885 Pentatricopeptide_repeat 224 272
IPR002885 Pentatricopeptide_repeat 527 575
IPR002885 Pentatricopeptide_repeat 21 70
IPR002885 Pentatricopeptide_repeat 325 372
IPR002885 Pentatricopeptide_repeat 123 169
IPR002885 Pentatricopeptide_repeat 80 120
No external refs found!