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  5. MA_20782g0010

MA_20782g0010


Description : Pentatricopeptide repeat-containing protein At2g27610 OS=Arabidopsis thaliana (sp|q9zuw3|pp172_arath : 661.0)


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_20782g0010
Cluster HCCA: Cluster_116

Target Alias Description ECC score Gene Family Method Actions
Adi_g033331 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Adi_g036802 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Adi_g067964 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g21708 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Aev_g21991 No alias ssDNA-binding protein *(OSB) & original description: none 0.07 OrthoFinder output from all 47 species
Ala_g05316 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g06555 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g12452 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g17018 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g20117 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g31164 SLO1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g04438 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g06335 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g06882 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g06888 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g07436 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g08654 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g10792 REME1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g11263 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g15532 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g16090 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g18775 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g18892 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g18979 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g24105 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g26861 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g33642 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g54166 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g54953 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g58851 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g60956 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g63667 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g18696 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g27604 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g27880 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g27919 OTP86 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g02928 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g03401 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g03547 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g10753 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g12955 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g16818 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g28689 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g30689 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g36470 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g42334 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g68097 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene32466.t1 Aspi01Gene32466 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene35394.t1 Aspi01Gene35394 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0003.g007676 No alias not classified & original description: CDS=1-2364 0.03 OrthoFinder output from all 47 species
Azfi_s0004.g008405 No alias not classified & original description: CDS=233-2125 0.04 OrthoFinder output from all 47 species
Azfi_s0040.g026593 CRR22 not classified & original description: CDS=1-1842 0.04 OrthoFinder output from all 47 species
Azfi_s0045.g030112 No alias not classified & original description: CDS=94-318 0.12 OrthoFinder output from all 47 species
Azfi_s0050.g030992 No alias not classified & original description: CDS=1-2877 0.03 OrthoFinder output from all 47 species
Azfi_s0063.g035332 No alias not classified & original description: CDS=1-1728 0.04 OrthoFinder output from all 47 species
Azfi_s0094.g043395 No alias not classified & original description: CDS=1-2703 0.03 OrthoFinder output from all 47 species
Azfi_s0175.g055975 No alias not classified & original description: CDS=1-4965 0.02 OrthoFinder output from all 47 species
Azfi_s0215.g058372 No alias not classified & original description: CDS=1-2739 0.04 OrthoFinder output from all 47 species
Azfi_s0270.g061187 No alias not classified & original description: CDS=1-3441 0.1 OrthoFinder output from all 47 species
Azfi_s0292.g063362 No alias not classified & original description: CDS=1-2379 0.06 OrthoFinder output from all 47 species
Azfi_s0583.g078513 No alias not classified & original description: CDS=1-2793 0.04 OrthoFinder output from all 47 species
Azfi_s0743.g084788 No alias not classified & original description: CDS=1-1605 0.06 OrthoFinder output from all 47 species
Azfi_s0771.g086172 CRR22 not classified & original description: CDS=1-2199 0.03 OrthoFinder output from all 47 species
Cba_g04086 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g06575 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g07724 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g07743 OTP86 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Cba_g19051 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g20714 LOI1, MEF11 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g30018 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g67910 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.04G048900.1 Ceric.04G048900 ssDNA-binding protein *(OSB) & original description:... 0.05 OrthoFinder output from all 47 species
Ceric.16G000100.1 REME1, Ceric.16G000100 not classified & original description: pacid=50589905... 0.03 OrthoFinder output from all 47 species
Ceric.28G018400.1 Ceric.28G018400 not classified & original description: pacid=50571000... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020553.200 No alias No description available 0.01 OrthoFinder output from all 47 species
Cre01.g025950 No alias Pentatricopeptide repeat-containing protein At5g02860... 0.01 OrthoFinder output from all 47 species
Dac_g03810 OTP86 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g04259 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g04615 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g05151 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g05743 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g18577 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g18761 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g18777 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g19094 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g21320 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g24746 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g24893 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g25020 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g25286 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Dac_g27947 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g29963 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g30147 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Dac_g30156 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g31531 OTP86 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g32893 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g33093 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g35959 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g36371 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g42858 CRR22 ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g43504 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g06431 CRR22 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g06971 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g07701 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g07753 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g12070 CRR22 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g16948 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g26802 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g35844 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g44643 No alias ssDNA-binding protein *(OSB) & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g03960 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g08291 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g13211 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g23381 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g50245 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g09249 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g15613 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01033906001 No alias Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
LOC_Os04g14130.1 LOC_Os04g14130 Pentatricopeptide repeat-containing protein At5g16860... 0.05 OrthoFinder output from all 47 species
LOC_Os06g47920.1 LOC_Os06g47920 Pentatricopeptide repeat-containing protein At5g44230... 0.03 OrthoFinder output from all 47 species
Len_g04340 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g04830 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g05355 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g18943 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g22243 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Len_g23208 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g28045 DOT4 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g54965 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g06706 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07409 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g07499 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g11894 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g13946 OTP86 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g14363 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g28173 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_10138132g0010 No alias Pentatricopeptide repeat-containing protein At3g02330,... 0.06 OrthoFinder output from all 47 species
Msp_g02475 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g04201 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g09454 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g22644 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g23110 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g23153 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g28216 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g28342 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g32054 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g41112 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g46088 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g46847 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g06242 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g21363 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g23766 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g06871 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g09573 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ore_g23094 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g24441 REME1 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ore_g27030 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g30175 PTAC9, OSB2 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g32143 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g32595 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g42576 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g03628 REME1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g58118 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0059.g015171 No alias not classified & original description: CDS=1-1305 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0088.g018619 No alias not classified & original description: CDS=1-2157 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0110.g020627 No alias not classified & original description: CDS=1-2037 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0126.g021770 EMB2758 not classified & original description: CDS=1-1959 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0132.g022190 No alias not classified & original description: CDS=1-2487 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0196.g025491 No alias not classified & original description: CDS=1-2298 0.02 OrthoFinder output from all 47 species
Sam_g02496 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g13791 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g14278 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g16312 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g17656 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Sam_g17751 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Sam_g21254 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Sam_g25244 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Sam_g26079 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g28767 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g30277 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Sam_g32958 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g35988 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Sam_g43933 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g51263 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Smo51483 CRR22 Pentatricopeptide repeat-containing protein At3g53360,... 0.02 OrthoFinder output from all 47 species
Spa_g09284 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g11331 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g05031 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g05622 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g06127 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g13206 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g13336 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g17467 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g21192 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g22747 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g24074 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g28558 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g34663 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Tin_g44042 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Tin_g45240 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g46234 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 150 198
IPR002885 Pentatricopeptide_repeat 252 299
IPR002885 Pentatricopeptide_repeat 353 400
IPR002885 Pentatricopeptide_repeat 50 97
IPR002885 Pentatricopeptide_repeat 454 501
IPR032867 DYW_dom 627 751
IPR002885 Pentatricopeptide_repeat 18 47
IPR002885 Pentatricopeptide_repeat 125 147
IPR002885 Pentatricopeptide_repeat 528 553
IPR002885 Pentatricopeptide_repeat 428 452
No external refs found!