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  5. MA_237076g0010

MA_237076g0010


Description : Pentatricopeptide repeat-containing protein At1g20230 OS=Arabidopsis thaliana (sp|q9lnu6|ppr53_arath : 556.0)


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_237076g0010

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00113430 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g18485... 0.01 OrthoFinder output from all 47 species
Aob_g26965 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene07235.t1 REME1, Aspi01Gene07235 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene18163.t1 CRR22, Aspi01Gene18163 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene32466.t1 Aspi01Gene32466 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene34798.t1 Aspi01Gene34798 ssDNA-binding protein *(OSB) & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene36978.t1 Aspi01Gene36978 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g07719 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g20779 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g67910 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000383.101 No alias No description available 0.02 OrthoFinder output from all 47 species
Dde_g24377 CRR22 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Dde_g25114 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g18823 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os01g27650.1 LOC_Os01g27650 Pentatricopeptide repeat-containing protein At2g33680... 0.02 OrthoFinder output from all 47 species
Len_g04340 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g05355 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g22243 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Len_g54965 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g06655 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g28342 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g02854 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ppi_g53029 OTP86 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0038.g012042 No alias not classified & original description: CDS=1-3273 0.01 OrthoFinder output from all 47 species
Sam_g06558 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Sam_g14278 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Tin_g34663 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Zm00001e040855_P003 Zm00001e040855 Pentatricopeptide repeat-containing protein At2g37320... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 194 221
IPR002885 Pentatricopeptide_repeat 472 498
IPR002885 Pentatricopeptide_repeat 509 532
IPR002885 Pentatricopeptide_repeat 27 51
IPR033443 PPR_long 227 384
IPR002885 Pentatricopeptide_repeat 119 167
IPR032867 DYW_dom 607 730
No external refs found!