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  5. MA_2991g0010

MA_2991g0010


Description : RNA editing factor (MEF12)


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_2991g0010
Cluster HCCA: Cluster_42

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00008p00153950 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.03 OrthoFinder output from all 47 species
AMTR_s00029p00062590 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein DOT4,... 0.02 OrthoFinder output from all 47 species
AMTR_s00032p00219990 OTP84 Pentatricopeptide repeat-containing protein At3g57430,... 0.04 OrthoFinder output from all 47 species
AMTR_s00057p00199190 No alias Pentatricopeptide repeat-containing protein At4g15720... 0.03 OrthoFinder output from all 47 species
AMTR_s00065p00031420 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g33680... 0.02 OrthoFinder output from all 47 species
AMTR_s00068p00031610 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
AMTR_s00084p00089150 OTP86,... Pentatricopeptide repeat-containing protein At3g63370,... 0.03 OrthoFinder output from all 47 species
AT5G44785 OSB3 organellar single-stranded DNA binding protein 3 0.03 OrthoFinder output from all 47 species
Adi_g005447 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g005721 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g005790 OTP86 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g005792 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g008833 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g009247 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g034338 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g058773 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g059409 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g069068 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g075693 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g095207 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g099276 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g17642 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g19723 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g05709 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g06396 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g07147 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g07519 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g15903 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g17647 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g18201 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g19312 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g22255 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g62803 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g18705 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g19060 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g19301 OTP84 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g28594 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g37340 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g37586 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g39842 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g09002 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g17692 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g31135 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g68032 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene13883.t1 Aspi01Gene13883 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene59819.t1 Aspi01Gene59819 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0035.g025724 No alias not classified & original description: CDS=1-3840 0.03 OrthoFinder output from all 47 species
Azfi_s0046.g030178 No alias ssDNA-binding protein *(OSB) & original description: CDS=82-2832 0.03 OrthoFinder output from all 47 species
Azfi_s0880.g091024 No alias not classified & original description: CDS=182-3622 0.03 OrthoFinder output from all 47 species
Cba_g02644 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g06497 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g06575 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g07753 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g16282 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g26721 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g29979 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g30006 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g34742 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g36067 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g67470 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g72789 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g74873 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g76849 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021035.24 No alias Pentatricopeptide repeat-containing protein At1g63080,... 0.02 OrthoFinder output from all 47 species
Dac_g43623 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g05682 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g06433 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g43193 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g50838 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g04325 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g05887 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g08678 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g15735 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g16485 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g18837 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g21285 DOT4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g21312 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g22354 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g22814 OTP86 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g28210 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g28404 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g36054 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g46744 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g50888 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g19239 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g20526 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g23635 CRR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01000244001 No alias Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
GSVIVT01003124001 OTP86 Pentatricopeptide repeat-containing protein At3g63370,... 0.04 OrthoFinder output from all 47 species
GSVIVT01008757001 No alias Pentatricopeptide repeat-containing protein At1g20230... 0.04 OrthoFinder output from all 47 species
GSVIVT01021246001 DOT4 Pentatricopeptide repeat-containing protein DOT4,... 0.04 OrthoFinder output from all 47 species
GSVIVT01022208001 No alias Pentatricopeptide repeat-containing protein At4g19191,... 0.04 OrthoFinder output from all 47 species
GSVIVT01023644001 No alias Pentatricopeptide repeat-containing protein At4g30700... 0.03 OrthoFinder output from all 47 species
GSVIVT01032394001 EMB2758 Pentatricopeptide repeat-containing protein At4g33990... 0.03 OrthoFinder output from all 47 species
GSVIVT01035618001 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.04 OrthoFinder output from all 47 species
Gb_01327 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 OrthoFinder output from all 47 species
Gb_01638 No alias Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
Gb_02573 CRR22 Pentatricopeptide repeat-containing protein At2g22070... 0.04 OrthoFinder output from all 47 species
Gb_06568 REME1 Pentatricopeptide repeat-containing protein At2g03880,... 0.03 OrthoFinder output from all 47 species
Gb_07754 CRR22 Pentatricopeptide repeat-containing protein At4g02750... 0.02 OrthoFinder output from all 47 species
Gb_11389 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.04 OrthoFinder output from all 47 species
Gb_14728 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.02 OrthoFinder output from all 47 species
Gb_16366 CRR22 Pentatricopeptide repeat-containing protein At3g57430,... 0.03 OrthoFinder output from all 47 species
Gb_19040 No alias Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
Gb_21054 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 OrthoFinder output from all 47 species
Gb_21064 CRR22 RNA editing factor (OTP82) 0.03 OrthoFinder output from all 47 species
Gb_23267 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.02 OrthoFinder output from all 47 species
Gb_26311 No alias Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
Gb_26340 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.03 OrthoFinder output from all 47 species
Gb_28288 CRR22 Pentatricopeptide repeat-containing protein At2g27610... 0.02 OrthoFinder output from all 47 species
Gb_28759 No alias Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
Gb_28764 CRR2 RNA editing factor (MEF1) 0.03 OrthoFinder output from all 47 species
Gb_33537 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.02 OrthoFinder output from all 47 species
Gb_33719 No alias RNA editing factor (OTP82) 0.03 OrthoFinder output from all 47 species
Gb_36085 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species
Gb_40766 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species
LOC_Os03g63260.3 LOC_Os03g63260 Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
LOC_Os11g17530.2 LOC_Os11g17530 Pentatricopeptide repeat-containing protein At2g37320... 0.03 OrthoFinder output from all 47 species
Len_g01393 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g02909 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g05253 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g13937 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g18252 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g33495 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g53944 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g07419 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g15171 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_211508g0010 CRR22 Pentatricopeptide repeat-containing protein DOT4,... 0.02 OrthoFinder output from all 47 species
MA_40997g0010 REME1 Pentatricopeptide repeat-containing protein At4g02750... 0.02 OrthoFinder output from all 47 species
MA_83662g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species
MA_921g0010 CRR22 Pentatricopeptide repeat-containing protein At3g12770... 0.03 OrthoFinder output from all 47 species
Msp_g08181 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g13692 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g14913 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g16104 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g23157 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g23170 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g23186 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g28492 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g33823 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g33994 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g34233 REME1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g35725 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g36833 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g43428 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g44842 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Nbi_g04943 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g04988 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g06654 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g10472 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g13749 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g15421 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g27954 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g27959 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g27965 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g32352 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g02979 PTAC9, OSB2 cofactor of plastid-encoded RNA polymerase *(TAC9) &... 0.04 OrthoFinder output from all 47 species
Ore_g06871 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g16061 OSB3 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g17591 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g18691 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g37890 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g41725 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g30413 OTP84 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g63206 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g63293 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g63493 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g64725 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g64875 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g16161 OTP82 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g20888 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g13232 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g59345 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0018.g007447 No alias not classified & original description: CDS=108-3026 0.03 OrthoFinder output from all 47 species
Sam_g13514 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g30171 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g39170 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g40571 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo10066 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.02 OrthoFinder output from all 47 species
Smo116559 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.02 OrthoFinder output from all 47 species
Smo465 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
Smo98955 CRR22 Pentatricopeptide repeat-containing protein At2g13600... 0.02 OrthoFinder output from all 47 species
Solyc07g053520.2.1 SLO1, Solyc07g053520 Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
Solyc09g009790.4.1 Solyc09g009790 Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
Spa_g26279 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g27883 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g44822 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g51293 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e007042_P001 Zm00001e007042 RNA editing factor (AEF1) 0.03 OrthoFinder output from all 47 species
Zm00001e011875_P001 OTP85, Zm00001e011875 RNA editing factor (OTP85) 0.02 OrthoFinder output from all 47 species
Zm00001e027846_P001 CRR21, Zm00001e027846 RNA editing factor (CRR21) 0.02 OrthoFinder output from all 47 species
Zm00001e034478_P001 Zm00001e034478 Pentatricopeptide repeat-containing protein At3g24000,... 0.02 OrthoFinder output from all 47 species
Zm00001e039394_P003 Zm00001e039394 Pentatricopeptide repeat-containing protein At5g04780,... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 527 575
IPR002885 Pentatricopeptide_repeat 426 474
IPR002885 Pentatricopeptide_repeat 326 373
IPR002885 Pentatricopeptide_repeat 630 677
IPR002885 Pentatricopeptide_repeat 124 171
IPR002885 Pentatricopeptide_repeat 224 269
IPR002885 Pentatricopeptide_repeat 502 525
IPR032867 DYW_dom 804 927
No external refs found!