1. Home
  2. Species
  3. Picea abies
  4. Sequence
  5. MA_34468g0010

MA_34468g0010


Description : helicase Prp43 of Intron-Lariat Spliceosome complex


Gene families : OG0000184 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000184_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_34468g0010

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00110p00073830 ESP3, EMB2733,... RNA processing.RNA splicing.spliceosome... 0.03 OrthoFinder output from all 47 species
AT1G26370 No alias RNA helicase family protein 0.03 OrthoFinder output from all 47 species
Adi_g045408 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g107993 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g11041 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g11071 No alias RNA helicase Prp43 of Intron-Lariat Spliceosome complex... 0.02 OrthoFinder output from all 47 species
Ceric.04G078700.1 Ceric.04G078700 not classified & original description: pacid=50630845... 0.06 OrthoFinder output from all 47 species
Ceric.21G075900.1 EMB3011, Ceric.21G075900 RNA helicase *(Prp16) & original description:... 0.04 OrthoFinder output from all 47 species
Ceric.25G032700.1 Ceric.25G032700 RNA helicase Prp43 of Intron-Lariat Spliceosome complex... 0.04 OrthoFinder output from all 47 species
Cre07.g349100 ESP3, EMB2733 RNA processing.RNA splicing.spliceosome... 0.01 OrthoFinder output from all 47 species
Dde_g07449 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g07695 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g06989 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Gb_22388 No alias helicase Prp43 of Intron-Lariat Spliceosome complex 0.04 OrthoFinder output from all 47 species
LOC_Os02g19860.1 LOC_Os02g19860 Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 OrthoFinder output from all 47 species
LOC_Os07g32430.1 EMB3011, LOC_Os07g32430 RNA helicase (Prp16) 0.02 OrthoFinder output from all 47 species
Len_g09738 ESP3, EMB2733 RNA helicase *(Prp2) & original description: none 0.02 OrthoFinder output from all 47 species
Mp7g03460.1 EMB3011 RNA helicase (Prp16) 0.02 OrthoFinder output from all 47 species
Msp_g32552 EMB3011 RNA helicase *(Prp16) & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g03086 No alias RNA helicase *(Prp22) & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g07572 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g10443 ESP3, EMB2733 RNA helicase *(Prp2) & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g42980 EMB3011 RNA helicase *(Prp16) & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g66576 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pp3s62_110V3.1 Pp3s62_110 RNA helicase family protein 0.01 OrthoFinder output from all 47 species
Ppi_g04698 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0047.g013414 EMB3011 RNA helicase *(Prp16) & original description: CDS=171-3614 0.03 OrthoFinder output from all 47 species
Sam_g06275 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g14599 No alias RNA helicase *(Prp16) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g16290 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g25079 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g29503 No alias RNA helicase *(Prp22) & original description: none 0.03 OrthoFinder output from all 47 species
Solyc03g115390.4.1 ESP3, EMB2733,... RNA helicase (Prp2) 0.03 OrthoFinder output from all 47 species
Spa_g12111 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g12231 No alias RNA helicase Prp43 of Intron-Lariat Spliceosome complex... 0.02 OrthoFinder output from all 47 species
Zm00001e001487_P003 Zm00001e001487 helicase Prp43 of Intron-Lariat Spliceosome complex 0.03 OrthoFinder output from all 47 species
Zm00001e014112_P001 Zm00001e014112 Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.03 OrthoFinder output from all 47 species
Zm00001e036358_P005 Zm00001e036358 Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0004386 helicase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
InterPro domains Description Start Stop
IPR007502 Helicase-assoc_dom 454 542
IPR011545 DEAD/DEAH_box_helicase_dom 61 213
IPR001650 Helicase_C 258 391
IPR011709 DEAD-box_helicase_OB_fold 604 680
No external refs found!