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  5. MA_356g0010

MA_356g0010


Description : Putative pentatricopeptide repeat-containing protein At3g23330 OS=Arabidopsis thaliana (sp|q9lw63|pp251_arath : 503.0)


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_356g0010
Cluster HCCA: Cluster_212

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00098p00155650 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g39350... 0.02 OrthoFinder output from all 47 species
AT1G13410 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from all 47 species
AT3G08820 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.01 OrthoFinder output from all 47 species
AT3G23330 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from all 47 species
AT3G49740 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from all 47 species
AT4G21065 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 OrthoFinder output from all 47 species
AT4G38010 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.02 OrthoFinder output from all 47 species
AT5G16860 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from all 47 species
Adi_g004461 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g049921 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g02126 OSB1 ssDNA-binding protein *(OSB) & original description: none 0.01 OrthoFinder output from all 47 species
Aev_g07978 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g17004 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g05133 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g07424 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g38666 EMB2261 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g61086 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g23985 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene27421.t1 Aspi01Gene27421 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene35417.t1 OTP82, Aspi01Gene35417 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene69669.t1 CRR22, Aspi01Gene69669 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0079.g038406 OTP86 not classified & original description: CDS=1-2394 0.03 OrthoFinder output from all 47 species
Cba_g05269 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g19052 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g35153 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g44924 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Cba_g76750 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.13G082600.1 Ceric.13G082600 not classified & original description: pacid=50636923... 0.03 OrthoFinder output from all 47 species
Ceric.27G064300.1 Ceric.27G064300 not classified & original description: pacid=50606133... 0.03 OrthoFinder output from all 47 species
Dac_g35222 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Dac_g38568 REME1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g39275 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g17097 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g49796 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Dde_g21688 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g22365 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g41742 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g18823 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g24017 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01004939001 RARE1 RNA processing.organelle machineries.RNA... 0.02 OrthoFinder output from all 47 species
GSVIVT01010898001 No alias Pentatricopeptide repeat-containing protein At2g34400... 0.01 OrthoFinder output from all 47 species
GSVIVT01012159001 OTP84 Pentatricopeptide repeat-containing protein At3g57430,... 0.02 OrthoFinder output from all 47 species
GSVIVT01018018001 No alias Pentatricopeptide repeat-containing protein At3g22690... 0.03 OrthoFinder output from all 47 species
GSVIVT01019408001 No alias Pentatricopeptide repeat-containing protein At4g21300... 0.01 OrthoFinder output from all 47 species
GSVIVT01032994001 No alias Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
GSVIVT01034655001 No alias Pentatricopeptide repeat-containing protein At5g04780,... 0.01 OrthoFinder output from all 47 species
GSVIVT01037944001 No alias Pentatricopeptide repeat-containing protein At1g50270... 0.02 OrthoFinder output from all 47 species
Gb_00862 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 OrthoFinder output from all 47 species
Gb_04077 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species
Gb_04460 No alias Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
Gb_06523 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.01 OrthoFinder output from all 47 species
Gb_06693 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 OrthoFinder output from all 47 species
Gb_09793 No alias RNA editing factor (MEF7) 0.03 OrthoFinder output from all 47 species
Gb_11025 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.02 OrthoFinder output from all 47 species
Gb_13221 CRR22 Pentatricopeptide repeat-containing protein DOT4,... 0.02 OrthoFinder output from all 47 species
Gb_17294 CRR2 RNA editing factor (MEF3) 0.01 OrthoFinder output from all 47 species
Gb_18263 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.01 OrthoFinder output from all 47 species
Gb_21055 OTP84 Pentatricopeptide repeat-containing protein DOT4,... 0.02 OrthoFinder output from all 47 species
Gb_21351 VAC1, ECB2, ATECB2 RNA editing factor (CRR21) 0.02 OrthoFinder output from all 47 species
Gb_23967 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species
Gb_25328 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.02 OrthoFinder output from all 47 species
Gb_25555 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.02 OrthoFinder output from all 47 species
Gb_26651 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.02 OrthoFinder output from all 47 species
Gb_29995 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.02 OrthoFinder output from all 47 species
Gb_30661 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 OrthoFinder output from all 47 species
Gb_33062 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.02 OrthoFinder output from all 47 species
Gb_33411 EMB2261 Pentatricopeptide repeat-containing protein At2g27610... 0.03 OrthoFinder output from all 47 species
Gb_35108 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.03 OrthoFinder output from all 47 species
Gb_36260 OTP84 Pentatricopeptide repeat-containing protein At1g09410,... 0.02 OrthoFinder output from all 47 species
LOC_Os07g46770.1 LOC_Os07g46770 Pentatricopeptide repeat-containing protein At4g21065... 0.03 OrthoFinder output from all 47 species
Len_g04345 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g08349 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g14105 OTP86 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g18885 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g18959 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g22400 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g25958 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g26289 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g26588 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g28045 DOT4 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g44142 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g47516 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g06676 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g11824 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_211508g0010 CRR22 Pentatricopeptide repeat-containing protein DOT4,... 0.01 OrthoFinder output from all 47 species
MA_25729g0010 REME1 Pentatricopeptide repeat-containing protein At3g24000,... 0.01 OrthoFinder output from all 47 species
MA_474261g0010 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.02 OrthoFinder output from all 47 species
MA_53781g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.01 OrthoFinder output from all 47 species
Msp_g05274 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g17701 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g27065 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g19585 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g12874 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g63813 MEF19 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g15285 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Pnu_g29965 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g30285 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g05887 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g31303 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g55456 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g19460 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g38969 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo26993 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.01 OrthoFinder output from all 47 species
Smo399 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.01 OrthoFinder output from all 47 species
Solyc05g013200.1.1 OTP85, Solyc05g013200 RNA editing factor (OTP85) 0.03 OrthoFinder output from all 47 species
Spa_g22574 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g10878 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g25647 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g35293 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e001007_P001 Zm00001e001007 Putative pentatricopeptide repeat-containing protein... 0.01 OrthoFinder output from all 47 species
Zm00001e001038_P001 CRR2, Zm00001e001038 Pentatricopeptide repeat-containing protein At1g08070,... 0.01 OrthoFinder output from all 47 species
Zm00001e001918_P001 EMB2758, Zm00001e001918 Pentatricopeptide repeat-containing protein At4g33990... 0.02 OrthoFinder output from all 47 species
Zm00001e007042_P001 Zm00001e007042 RNA editing factor (AEF1) 0.02 OrthoFinder output from all 47 species
Zm00001e011519_P001 Zm00001e011519 Pentatricopeptide repeat-containing protein At4g21065... 0.02 OrthoFinder output from all 47 species
Zm00001e013713_P001 Zm00001e013713 Pentatricopeptide repeat-containing protein At4g20770... 0.02 OrthoFinder output from all 47 species
Zm00001e018565_P001 Zm00001e018565 Pentatricopeptide repeat-containing protein At3g13880... 0.01 OrthoFinder output from all 47 species
Zm00001e023504_P001 CRR22, Zm00001e023504 Pentatricopeptide repeat-containing protein At1g11290,... 0.02 OrthoFinder output from all 47 species
Zm00001e025557_P001 Zm00001e025557 Pentatricopeptide repeat-containing protein At5g56310... 0.02 OrthoFinder output from all 47 species
Zm00001e031660_P001 Zm00001e031660 Pentatricopeptide repeat-containing protein At4g14170... 0.01 OrthoFinder output from all 47 species
Zm00001e033171_P001 Zm00001e033171 Pentatricopeptide repeat-containing protein At2g22070... 0.02 OrthoFinder output from all 47 species
Zm00001e040920_P001 Zm00001e040920 Pentatricopeptide repeat-containing protein At3g26540... 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR032867 DYW_dom 462 575
IPR002885 Pentatricopeptide_repeat 430 458
IPR002885 Pentatricopeptide_repeat 187 234
IPR002885 Pentatricopeptide_repeat 289 336
IPR002885 Pentatricopeptide_repeat 86 134
No external refs found!