1. Home
  2. Species
  3. Picea abies
  4. Sequence
  5. MA_39263g0010

MA_39263g0010


Description : Pentatricopeptide repeat-containing protein At4g33170 OS=Arabidopsis thaliana (sp|q9smz2|pp347_arath : 614.0)


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_39263g0010

Target Alias Description ECC score Gene Family Method Actions
AT2G40720 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT3G15130 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g004453 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g015809 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g061193 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g067225 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g089158 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g101128 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g102144 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g116582 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g30778 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g28698 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0005.g009385 No alias not classified & original description: CDS=1-2319 0.03 OrthoFinder output from all 47 species
Azfi_s0028.g023827 No alias not classified & original description: CDS=1-3255 0.03 OrthoFinder output from all 47 species
Azfi_s1890.g107856 No alias not classified & original description: CDS=1-3162 0.04 OrthoFinder output from all 47 species
Ceric.09G023600.1 Ceric.09G023600 not classified & original description: pacid=50587368... 0.03 OrthoFinder output from all 47 species
Ceric.37G053600.1 Ceric.37G053600 not classified & original description: pacid=50616731... 0.03 OrthoFinder output from all 47 species
Dac_g09065 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01000072001 No alias Pentatricopeptide repeat-containing protein At3g05340... 0.03 OrthoFinder output from all 47 species
GSVIVT01002530001 No alias Pentatricopeptide repeat-containing protein At3g49710... 0.05 OrthoFinder output from all 47 species
GSVIVT01003422001 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.07 OrthoFinder output from all 47 species
GSVIVT01003957001 No alias Pentatricopeptide repeat-containing protein At5g65570... 0.03 OrthoFinder output from all 47 species
GSVIVT01007811001 No alias Pentatricopeptide repeat-containing protein At3g22690... 0.03 OrthoFinder output from all 47 species
GSVIVT01007974001 No alias Pentatricopeptide repeat-containing protein At5g61400... 0.07 OrthoFinder output from all 47 species
GSVIVT01009407001 EMB2261 Pentatricopeptide repeat-containing protein At2g27610... 0.04 OrthoFinder output from all 47 species
GSVIVT01010647001 SLO1 Pentatricopeptide repeat-containing protein At2g22410,... 0.06 OrthoFinder output from all 47 species
GSVIVT01012159001 OTP84 Pentatricopeptide repeat-containing protein At3g57430,... 0.04 OrthoFinder output from all 47 species
GSVIVT01012174001 No alias Pentatricopeptide repeat-containing protein At2g03380,... 0.05 OrthoFinder output from all 47 species
GSVIVT01014727001 No alias Pentatricopeptide repeat-containing protein At4g21065... 0.03 OrthoFinder output from all 47 species
GSVIVT01015466001 LPA66 Pentatricopeptide repeat-containing protein At5g48910... 0.04 OrthoFinder output from all 47 species
GSVIVT01016874001 OTP82 Pentatricopeptide repeat-containing protein At1g08070,... 0.06 OrthoFinder output from all 47 species
GSVIVT01017989001 LOI1, MEF11 RNA processing.organelle machineries.RNA... 0.05 OrthoFinder output from all 47 species
GSVIVT01018262001 No alias Pentatricopeptide repeat-containing protein At2g44880... 0.03 OrthoFinder output from all 47 species
GSVIVT01019408001 No alias Pentatricopeptide repeat-containing protein At4g21300... 0.03 OrthoFinder output from all 47 species
GSVIVT01022516001 No alias Pentatricopeptide repeat-containing protein At5g06540... 0.04 OrthoFinder output from all 47 species
GSVIVT01023860001 REME1 Pentatricopeptide repeat-containing protein At2g03880,... 0.06 OrthoFinder output from all 47 species
GSVIVT01024588001 OTP82 Pentatricopeptide repeat-containing protein At1g08070,... 0.03 OrthoFinder output from all 47 species
GSVIVT01024915001 No alias Pentatricopeptide repeat-containing protein At5g16860... 0.03 OrthoFinder output from all 47 species
GSVIVT01025569001 No alias Pentatricopeptide repeat-containing protein At5g66500,... 0.03 OrthoFinder output from all 47 species
GSVIVT01027525001 LPA66 Pentatricopeptide repeat-containing protein At4g21065... 0.03 OrthoFinder output from all 47 species
GSVIVT01028022001 No alias Pentatricopeptide repeat-containing protein At3g62890... 0.03 OrthoFinder output from all 47 species
GSVIVT01029254001 OSB4 RNA biosynthesis.organelle machineries.RNA polymerase... 0.03 OrthoFinder output from all 47 species
GSVIVT01030054001 LPA66 Pentatricopeptide repeat-containing protein At5g48910... 0.05 OrthoFinder output from all 47 species
GSVIVT01031265001 LPA66 Pentatricopeptide repeat-containing protein At5g66520... 0.06 OrthoFinder output from all 47 species
GSVIVT01034655001 No alias Pentatricopeptide repeat-containing protein At5g04780,... 0.04 OrthoFinder output from all 47 species
GSVIVT01035837001 LPA66 Pentatricopeptide repeat-containing protein At4g21065... 0.03 OrthoFinder output from all 47 species
GSVIVT01036142001 No alias Pentatricopeptide repeat-containing protein At5g66520... 0.04 OrthoFinder output from all 47 species
GSVIVT01036757001 OTP84 Pentatricopeptide repeat-containing protein At1g20230... 0.05 OrthoFinder output from all 47 species
GSVIVT01037944001 No alias Pentatricopeptide repeat-containing protein At1g50270... 0.04 OrthoFinder output from all 47 species
Gb_00194 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.04 OrthoFinder output from all 47 species
Gb_00409 No alias RNA editing factor (SLO2) 0.04 OrthoFinder output from all 47 species
Gb_03136 EMB2261 Pentatricopeptide repeat-containing protein At2g27610... 0.04 OrthoFinder output from all 47 species
Gb_04091 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.05 OrthoFinder output from all 47 species
Gb_04460 No alias Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
Gb_04616 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 OrthoFinder output from all 47 species
Gb_05127 No alias Pentatricopeptide repeat-containing protein At3g26540... 0.04 OrthoFinder output from all 47 species
Gb_07872 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.05 OrthoFinder output from all 47 species
Gb_10158 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 OrthoFinder output from all 47 species
Gb_18908 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species
Gb_20266 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.06 OrthoFinder output from all 47 species
Gb_20774 CRR22 RNA editing factor (MEF19). RNA editing factor (OTP82) 0.04 OrthoFinder output from all 47 species
Gb_21056 CRR22 RNA editing factor (OTP82) 0.04 OrthoFinder output from all 47 species
Gb_21435 CRR22 Pentatricopeptide repeat-containing protein DOT4,... 0.04 OrthoFinder output from all 47 species
Gb_23083 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.04 OrthoFinder output from all 47 species
Gb_25271 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.04 OrthoFinder output from all 47 species
Gb_26057 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.04 OrthoFinder output from all 47 species
Gb_26696 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.04 OrthoFinder output from all 47 species
Gb_28038 CRR22 Pentatricopeptide repeat-containing protein At3g12770... 0.06 OrthoFinder output from all 47 species
Gb_28780 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.04 OrthoFinder output from all 47 species
Gb_29028 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 OrthoFinder output from all 47 species
Gb_29877 CRR22 RNA editing factor (OTP82) 0.04 OrthoFinder output from all 47 species
Gb_33135 CRR22 Pentatricopeptide repeat-containing protein At4g13650... 0.04 OrthoFinder output from all 47 species
Gb_35395 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
Gb_35645 CRR2 Pentatricopeptide repeat-containing protein At3g46790,... 0.04 OrthoFinder output from all 47 species
Gb_40436 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 OrthoFinder output from all 47 species
Gb_41317 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.04 OrthoFinder output from all 47 species
LOC_Os02g07050.1 LOC_Os02g07050 Pentatricopeptide repeat-containing protein At4g20770... 0.03 OrthoFinder output from all 47 species
LOC_Os02g09800.1 OTP82, LOC_Os02g09800 Pentatricopeptide repeat-containing protein At1g08070,... 0.03 OrthoFinder output from all 47 species
LOC_Os03g13230.1 LOC_Os03g13230 Pentatricopeptide repeat-containing protein At4g37170... 0.03 OrthoFinder output from all 47 species
LOC_Os03g63510.1 LOC_Os03g63510 Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
LOC_Os04g35650.1 LOC_Os04g35650 Pentatricopeptide repeat-containing protein At3g26540... 0.03 OrthoFinder output from all 47 species
LOC_Os05g05490.1 LOC_Os05g05490 Pentatricopeptide repeat-containing protein At3g05340... 0.03 OrthoFinder output from all 47 species
LOC_Os05g50460.1 LOC_Os05g50460 Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
LOC_Os07g10400.1 CRR22, LOC_Os07g10400 Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species
LOC_Os07g13540.1 EMB2261, LOC_Os07g13540 Pentatricopeptide repeat-containing protein At2g22070... 0.03 OrthoFinder output from all 47 species
LOC_Os07g15570.1 CRR2, LOC_Os07g15570 Pentatricopeptide repeat-containing protein At2g46050,... 0.03 OrthoFinder output from all 47 species
LOC_Os11g45410.1 LOC_Os11g45410 Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
LOC_Os12g15460.1 LOC_Os12g15460 Pentatricopeptide repeat-containing protein At1g18485... 0.03 OrthoFinder output from all 47 species
LOC_Os12g30620.1 LOC_Os12g30620 Pentatricopeptide repeat-containing protein At3g29230... 0.03 OrthoFinder output from all 47 species
Len_g04137 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g04246 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g05268 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g12996 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g17363 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g18583 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g19027 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g26564 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g08388 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc02g070710.3.1 Solyc02g070710 Pentatricopeptide repeat-containing protein At3g20730... 0.04 OrthoFinder output from all 47 species
Solyc04g005460.1.1 OTP82, Solyc04g005460 Pentatricopeptide repeat-containing protein At2g20540... 0.03 OrthoFinder output from all 47 species
Solyc07g006990.3.1 Solyc07g006990 Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
Spa_g26191 EMB2261 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e005246_P001 Zm00001e005246 Pentatricopeptide repeat-containing protein At2g41080... 0.03 OrthoFinder output from all 47 species
Zm00001e028330_P001 PTAC9, OSB2,... ssDNA-binding protein (OSB). TAC9 cofactor of... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
InterPro domains Description Start Stop
IPR032867 DYW_dom 612 736
IPR002885 Pentatricopeptide_repeat 337 385
IPR002885 Pentatricopeptide_repeat 438 486
IPR002885 Pentatricopeptide_repeat 237 285
IPR002885 Pentatricopeptide_repeat 136 182
IPR002885 Pentatricopeptide_repeat 211 236
IPR002885 Pentatricopeptide_repeat 514 537
No external refs found!