MA_40328g0010 (PGP20)

Aliases : PGP20

Description : ABC transporter B family member 20 OS=Arabidopsis thaliana (sp|q9m3b9|ab20b_arath : 695.0)

Gene families : OG0000048 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: MA_40328g0010
Cluster	HCCA: Cluster_182

Target	Alias	Description	ECC score	Gene Family Method
AT2G39480	PGP6	P-glycoprotein 6	0.03	OrthoFinder output from all 47 species
Ala_g17861	ABCB19,...	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Als_g34073	PGP20	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g13591	PGP6	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Azfi_s0203.g057675	ABCB19,...	subfamily ABCB transporter & original description: CDS=1-3912	0.03	OrthoFinder output from all 47 species
Ceric.10G028600.1	PGP20, Ceric.10G028600	subfamily ABCB transporter & original description:...	0.03	OrthoFinder output from all 47 species
Gb_31652	PGP6	subfamily ABCB transporter	0.03	OrthoFinder output from all 47 species
LOC_Os01g52550.1	LOC_Os01g52550	subfamily ABCB transporter	0.02	OrthoFinder output from all 47 species
Len_g47394	PGP2	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
MA_141308g0010	ABCB19,...	ABC transporter B family member 19 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Msp_g34237	ABCB19,...	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g19754	ABCB19,...	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g19207	ABCB19,...	subfamily ABCB transporter & original description: none	0.04	OrthoFinder output from all 47 species
Smo139408	PGP20	Solute transport.primary active transport.ABC...	0.03	OrthoFinder output from all 47 species
Smo169182	ATPGP4, PGP4, ABCB4, MDR4	Solute transport.primary active transport.ABC...	0.02	OrthoFinder output from all 47 species
Solyc04g010310.4.1	PGP20, Solyc04g010310	subfamily ABCB transporter	0.04	OrthoFinder output from all 47 species
Solyc12g098840.3.1	PGP11, Solyc12g098840	subfamily ABCB transporter	0.03	OrthoFinder output from all 47 species
Zm00001e038462_P002	PGP20, Zm00001e038462	subfamily ABCB transporter	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005215	transporter activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006810	transport	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0015399	primary active transmembrane transporter activity	None	Extended
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0016887	ATP hydrolysis activity	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0022804	active transmembrane transporter activity	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0042626	ATPase-coupled transmembrane transporter activity	IEA	Interproscan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0055085	transmembrane transport	IEA	Interproscan
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0005634	nucleus	IEP	HCCA
CC	GO:0043227	membrane-bounded organelle	IEP	HCCA
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003439	ABC_transporter-like_ATP-bd	213	361
IPR011527	ABC1_TM_dom	36	142

External Links

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MA_40328g0010 (PGP20)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation