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  5. MA_440697g0010

MA_440697g0010


Description : Pentatricopeptide repeat-containing protein DOT4, chloroplastic OS=Arabidopsis thaliana (sp|q9sn39|pp320_arath : 628.0)


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_440697g0010
Cluster HCCA: Cluster_172

Target Alias Description ECC score Gene Family Method Actions
Azfi_s0005.g009385 No alias not classified & original description: CDS=1-2319 0.07 OrthoFinder output from all 47 species
GSVIVT01002530001 No alias Pentatricopeptide repeat-containing protein At3g49710... 0.04 OrthoFinder output from all 47 species
GSVIVT01023860001 REME1 Pentatricopeptide repeat-containing protein At2g03880,... 0.06 OrthoFinder output from all 47 species
GSVIVT01028154001 No alias Pentatricopeptide repeat-containing protein At2g35030,... 0.05 OrthoFinder output from all 47 species
Gb_00852 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.03 OrthoFinder output from all 47 species
Gb_03473 OTP84 Pentatricopeptide repeat-containing protein At3g57430,... 0.04 OrthoFinder output from all 47 species
Gb_03572 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 OrthoFinder output from all 47 species
Gb_03997 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.02 OrthoFinder output from all 47 species
Gb_05649 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 OrthoFinder output from all 47 species
Gb_08569 OTP84 RNA editing factor (OTP82) 0.07 OrthoFinder output from all 47 species
Gb_09793 No alias RNA editing factor (MEF7) 0.05 OrthoFinder output from all 47 species
Gb_10726 No alias Putative pentatricopeptide repeat-containing protein... 0.05 OrthoFinder output from all 47 species
Gb_11925 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.06 OrthoFinder output from all 47 species
Gb_14966 No alias Pentatricopeptide repeat-containing protein At4g20770... 0.03 OrthoFinder output from all 47 species
Gb_16327 CRR22 RNA editing factor (OTP82) 0.03 OrthoFinder output from all 47 species
Gb_17620 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
Gb_20153 No alias Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
Gb_21054 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.07 OrthoFinder output from all 47 species
Gb_21237 REME1 Putative pentatricopeptide repeat-containing protein... 0.08 OrthoFinder output from all 47 species
Gb_22656 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.04 OrthoFinder output from all 47 species
Gb_23089 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.04 OrthoFinder output from all 47 species
Gb_23934 OTP84 Pentatricopeptide repeat-containing protein At3g12770... 0.07 OrthoFinder output from all 47 species
Gb_24633 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.07 OrthoFinder output from all 47 species
Gb_26861 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.09 OrthoFinder output from all 47 species
Gb_28288 CRR22 Pentatricopeptide repeat-containing protein At2g27610... 0.06 OrthoFinder output from all 47 species
Gb_29880 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.05 OrthoFinder output from all 47 species
Gb_32455 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.05 OrthoFinder output from all 47 species
Gb_32965 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 OrthoFinder output from all 47 species
Gb_35042 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.04 OrthoFinder output from all 47 species
Gb_36260 OTP84 Pentatricopeptide repeat-containing protein At1g09410,... 0.04 OrthoFinder output from all 47 species
Gb_37102 OTP84 RNA editing factor (MEF19) 0.04 OrthoFinder output from all 47 species
Gb_37572 OTP84 Pentatricopeptide repeat-containing protein At2g22070... 0.03 OrthoFinder output from all 47 species
Gb_38248 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.05 OrthoFinder output from all 47 species
Gb_38417 CRR2 OTP70 plastidial RNA splicing factor 0.03 OrthoFinder output from all 47 species
Gb_38992 EMB2758 Pentatricopeptide repeat-containing protein At4g33990... 0.03 OrthoFinder output from all 47 species
Pnu_g03497 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g04542 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g04547 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g13243 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g15003 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g15168 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g15703 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g15704 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g15721 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g16163 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g16169 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g22357 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g29837 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g29968 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g30094 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g30631 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g30641 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g12389 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Smo122941 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.05 OrthoFinder output from all 47 species
Smo71785 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.02 OrthoFinder output from all 47 species
Smo74749 No alias Pentatricopeptide repeat-containing protein At3g24000,... 0.03 OrthoFinder output from all 47 species
Smo89588 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 OrthoFinder output from all 47 species
Spa_g08176 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g15589 CRR22 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g19364 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g20285 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g23977 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g24109 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g26191 EMB2261 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Spa_g26517 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g38315 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g45261 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g45647 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g47236 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g53533 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g56371 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 220 266
IPR002885 Pentatricopeptide_repeat 119 165
IPR002885 Pentatricopeptide_repeat 422 470
IPR032867 DYW_dom 595 719
IPR002885 Pentatricopeptide_repeat 565 591
IPR002885 Pentatricopeptide_repeat 395 421
IPR002885 Pentatricopeptide_repeat 295 320
IPR002885 Pentatricopeptide_repeat 323 353
IPR002885 Pentatricopeptide_repeat 496 520
No external refs found!