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  5. MA_501007g0010

MA_501007g0010


Description : Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana (sp|q9svp7|pp307_arath : 680.0)


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_501007g0010
Cluster HCCA: Cluster_42

Target Alias Description ECC score Gene Family Method Actions
AT3G25060 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g003294 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01000420001 MEF22 RNA processing.organelle machineries.RNA... 0.03 OrthoFinder output from all 47 species
GSVIVT01008407001 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 OrthoFinder output from all 47 species
GSVIVT01008715001 No alias Pentatricopeptide repeat-containing protein At2g33680... 0.05 OrthoFinder output from all 47 species
GSVIVT01008757001 No alias Pentatricopeptide repeat-containing protein At1g20230... 0.03 OrthoFinder output from all 47 species
GSVIVT01010125001 No alias Putative pentatricopeptide repeat-containing protein... 0.06 OrthoFinder output from all 47 species
GSVIVT01012174001 No alias Pentatricopeptide repeat-containing protein At2g03380,... 0.06 OrthoFinder output from all 47 species
GSVIVT01021774001 No alias Pentatricopeptide repeat-containing protein At4g20770... 0.03 OrthoFinder output from all 47 species
GSVIVT01026881001 No alias Pentatricopeptide repeat-containing protein At5g16860... 0.07 OrthoFinder output from all 47 species
GSVIVT01027504001 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.04 OrthoFinder output from all 47 species
GSVIVT01031265001 LPA66 Pentatricopeptide repeat-containing protein At5g66520... 0.07 OrthoFinder output from all 47 species
GSVIVT01032394001 EMB2758 Pentatricopeptide repeat-containing protein At4g33990... 0.04 OrthoFinder output from all 47 species
GSVIVT01033004001 No alias Pentatricopeptide repeat-containing protein At3g26782,... 0.07 OrthoFinder output from all 47 species
GSVIVT01036788001 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 OrthoFinder output from all 47 species
Gb_00194 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.04 OrthoFinder output from all 47 species
Gb_00206 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.08 OrthoFinder output from all 47 species
Gb_00409 No alias RNA editing factor (SLO2) 0.06 OrthoFinder output from all 47 species
Gb_01648 No alias Putative pentatricopeptide repeat-containing protein... 0.07 OrthoFinder output from all 47 species
Gb_02031 CRR22 RNA editing factor (MEF19) 0.05 OrthoFinder output from all 47 species
Gb_02065 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 OrthoFinder output from all 47 species
Gb_02998 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.05 OrthoFinder output from all 47 species
Gb_03570 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.05 OrthoFinder output from all 47 species
Gb_03579 No alias RNA editing factor (MEF12) 0.04 OrthoFinder output from all 47 species
Gb_03927 OTP84 Pentatricopeptide repeat-containing protein At2g22070... 0.07 OrthoFinder output from all 47 species
Gb_04381 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.05 OrthoFinder output from all 47 species
Gb_04460 No alias Putative pentatricopeptide repeat-containing protein... 0.05 OrthoFinder output from all 47 species
Gb_04785 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 OrthoFinder output from all 47 species
Gb_05123 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.04 OrthoFinder output from all 47 species
Gb_05127 No alias Pentatricopeptide repeat-containing protein At3g26540... 0.1 OrthoFinder output from all 47 species
Gb_05162 CRR22 Pentatricopeptide repeat-containing protein At4g02750... 0.05 OrthoFinder output from all 47 species
Gb_06523 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.05 OrthoFinder output from all 47 species
Gb_07635 CRR22 Pentatricopeptide repeat-containing protein DOT4,... 0.07 OrthoFinder output from all 47 species
Gb_08053 OTP84 Pentatricopeptide repeat-containing protein At3g57430,... 0.06 OrthoFinder output from all 47 species
Gb_08253 REME1 RNA editing factor (OTP82) 0.07 OrthoFinder output from all 47 species
Gb_08560 OTP84 Pentatricopeptide repeat-containing protein At3g57430,... 0.04 OrthoFinder output from all 47 species
Gb_08618 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.05 OrthoFinder output from all 47 species
Gb_08619 No alias RNA editing factor (MEF19) 0.04 OrthoFinder output from all 47 species
Gb_08745 CRR22 RNA editing factor (OTP82) 0.1 OrthoFinder output from all 47 species
Gb_08964 CRR2 Pentatricopeptide repeat-containing protein At3g57430,... 0.04 OrthoFinder output from all 47 species
Gb_09654 No alias RNA editing factor (MEF13) 0.05 OrthoFinder output from all 47 species
Gb_09704 EMB2261 Pentatricopeptide repeat-containing protein At2g27610... 0.05 OrthoFinder output from all 47 species
Gb_09794 No alias RNA editing factor (MEF7). RNA editing factor (MEF13) 0.04 OrthoFinder output from all 47 species
Gb_10133 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.11 OrthoFinder output from all 47 species
Gb_10152 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.05 OrthoFinder output from all 47 species
Gb_10158 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.05 OrthoFinder output from all 47 species
Gb_10908 No alias Putative pentatricopeptide repeat-containing protein... 0.05 OrthoFinder output from all 47 species
Gb_10985 OTP84 Pentatricopeptide repeat-containing protein At2g22070... 0.09 OrthoFinder output from all 47 species
Gb_11039 VAC1, ECB2, ATECB2 RNA editing factor (CRR21) 0.05 OrthoFinder output from all 47 species
Gb_11222 No alias Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
Gb_11581 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.04 OrthoFinder output from all 47 species
Gb_11905 REME1 Pentatricopeptide repeat-containing protein At4g02750... 0.04 OrthoFinder output from all 47 species
Gb_12004 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.08 OrthoFinder output from all 47 species
Gb_12240 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.04 OrthoFinder output from all 47 species
Gb_12554 OTP84 Pentatricopeptide repeat-containing protein At4g02750... 0.11 OrthoFinder output from all 47 species
Gb_12555 CRR22 Pentatricopeptide repeat-containing protein At2g22070... 0.05 OrthoFinder output from all 47 species
Gb_13221 CRR22 Pentatricopeptide repeat-containing protein DOT4,... 0.05 OrthoFinder output from all 47 species
Gb_13227 VAC1, ECB2, ATECB2 Pentatricopeptide repeat-containing protein At2g27610... 0.05 OrthoFinder output from all 47 species
Gb_13369 No alias RNA editing factor (MEF12) 0.09 OrthoFinder output from all 47 species
Gb_13717 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.05 OrthoFinder output from all 47 species
Gb_14458 CRR22 Pentatricopeptide repeat-containing protein At4g13650... 0.04 OrthoFinder output from all 47 species
Gb_15235 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.06 OrthoFinder output from all 47 species
Gb_15643 CRR22 Pentatricopeptide repeat-containing protein At4g02750... 0.1 OrthoFinder output from all 47 species
Gb_15666 No alias Putative pentatricopeptide repeat-containing protein... 0.05 OrthoFinder output from all 47 species
Gb_16101 EMB2758 Pentatricopeptide repeat-containing protein At4g33990... 0.05 OrthoFinder output from all 47 species
Gb_16102 CRR22 Pentatricopeptide repeat-containing protein At2g13600... 0.11 OrthoFinder output from all 47 species
Gb_16366 CRR22 Pentatricopeptide repeat-containing protein At3g57430,... 0.04 OrthoFinder output from all 47 species
Gb_16515 No alias RNA editing factor (MEF11) 0.07 OrthoFinder output from all 47 species
Gb_16828 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.07 OrthoFinder output from all 47 species
Gb_16848 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.05 OrthoFinder output from all 47 species
Gb_17094 CRR22 RNA editing factor (MEF19) 0.04 OrthoFinder output from all 47 species
Gb_18149 CRR2 OTP70 plastidial RNA splicing factor 0.07 OrthoFinder output from all 47 species
Gb_18788 OTP84 Pentatricopeptide repeat-containing protein At2g22070... 0.06 OrthoFinder output from all 47 species
Gb_19299 No alias Putative pentatricopeptide repeat-containing protein... 0.05 OrthoFinder output from all 47 species
Gb_19828 No alias RNA editing factor (OTP82) 0.04 OrthoFinder output from all 47 species
Gb_20572 CRR22 RNA editing factor (CRR21) 0.06 OrthoFinder output from all 47 species
Gb_21054 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 OrthoFinder output from all 47 species
Gb_21965 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.05 OrthoFinder output from all 47 species
Gb_22769 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.11 OrthoFinder output from all 47 species
Gb_23267 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.04 OrthoFinder output from all 47 species
Gb_23605 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.06 OrthoFinder output from all 47 species
Gb_23924 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.08 OrthoFinder output from all 47 species
Gb_25283 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.04 OrthoFinder output from all 47 species
Gb_25555 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.06 OrthoFinder output from all 47 species
Gb_26130 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 OrthoFinder output from all 47 species
Gb_26311 No alias Putative pentatricopeptide repeat-containing protein... 0.05 OrthoFinder output from all 47 species
Gb_27521 OTP84 Pentatricopeptide repeat-containing protein At2g22070... 0.07 OrthoFinder output from all 47 species
Gb_27833 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.05 OrthoFinder output from all 47 species
Gb_28279 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.06 OrthoFinder output from all 47 species
Gb_28612 LOI1, MEF11 RNA editing factor (MEF11) 0.05 OrthoFinder output from all 47 species
Gb_28762 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.08 OrthoFinder output from all 47 species
Gb_28770 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 OrthoFinder output from all 47 species
Gb_28780 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.06 OrthoFinder output from all 47 species
Gb_29028 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 OrthoFinder output from all 47 species
Gb_29534 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.05 OrthoFinder output from all 47 species
Gb_29868 CRR22 RNA editing factor (OTP82) 0.07 OrthoFinder output from all 47 species
Gb_29877 CRR22 RNA editing factor (OTP82) 0.05 OrthoFinder output from all 47 species
Gb_29879 CRR22 RNA editing factor (MEF19). RNA editing factor (OTP82) 0.07 OrthoFinder output from all 47 species
Gb_29990 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.06 OrthoFinder output from all 47 species
Gb_30732 No alias Pentatricopeptide repeat-containing protein At3g02330,... 0.06 OrthoFinder output from all 47 species
Gb_31266 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.06 OrthoFinder output from all 47 species
Gb_31706 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.06 OrthoFinder output from all 47 species
Gb_31795 CRR22 Pentatricopeptide repeat-containing protein At2g13600... 0.05 OrthoFinder output from all 47 species
Gb_32451 CRR22 Pentatricopeptide repeat-containing protein At3g63370,... 0.05 OrthoFinder output from all 47 species
Gb_32455 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.07 OrthoFinder output from all 47 species
Gb_32456 CRR22 Pentatricopeptide repeat-containing protein At4g02750... 0.09 OrthoFinder output from all 47 species
Gb_32983 No alias Pentatricopeptide repeat-containing protein At3g49710... 0.05 OrthoFinder output from all 47 species
Gb_33111 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.06 OrthoFinder output from all 47 species
Gb_33117 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.04 OrthoFinder output from all 47 species
Gb_33294 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.04 OrthoFinder output from all 47 species
Gb_33719 No alias RNA editing factor (OTP82) 0.04 OrthoFinder output from all 47 species
Gb_34297 CRR22 RNA editing factor (OTP82) 0.05 OrthoFinder output from all 47 species
Gb_35395 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 OrthoFinder output from all 47 species
Gb_35599 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.04 OrthoFinder output from all 47 species
Gb_35786 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.07 OrthoFinder output from all 47 species
Gb_35793 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 OrthoFinder output from all 47 species
Gb_36085 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.05 OrthoFinder output from all 47 species
Gb_37624 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.06 OrthoFinder output from all 47 species
Gb_38129 OTP84 RNA editing factor (OTP82) 0.05 OrthoFinder output from all 47 species
Gb_38297 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.08 OrthoFinder output from all 47 species
Gb_38503 CRR22 Pentatricopeptide repeat-containing protein At4g02750... 0.05 OrthoFinder output from all 47 species
Gb_38504 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 OrthoFinder output from all 47 species
Gb_39558 No alias Putative pentatricopeptide repeat-containing protein... 0.11 OrthoFinder output from all 47 species
Gb_40380 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.05 OrthoFinder output from all 47 species
Gb_40472 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.07 OrthoFinder output from all 47 species
Gb_40680 CRR22 Pentatricopeptide repeat-containing protein At2g22070... 0.04 OrthoFinder output from all 47 species
Gb_41233 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 OrthoFinder output from all 47 species
Gb_41753 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.06 OrthoFinder output from all 47 species
MA_187514g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species
MA_858608g0010 CRR22 Pentatricopeptide repeat-containing protein At4g02750... 0.05 OrthoFinder output from all 47 species
Ore_g01992 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g02088 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g03200 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g24442 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g27030 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g35308 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g41731 OTP82 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g42269 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc01g099000.1.1 Solyc01g099000 Pentatricopeptide repeat-containing protein At3g05340... 0.04 OrthoFinder output from all 47 species
Solyc02g079260.2.1 Solyc02g079260 Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
Solyc09g007040.1.1 Solyc09g007040 Pentatricopeptide repeat-containing protein At3g53360,... 0.03 OrthoFinder output from all 47 species
Solyc12g042400.1.1 SLO1, Solyc12g042400 Pentatricopeptide repeat-containing protein At2g29760,... 0.04 OrthoFinder output from all 47 species
Spa_g02164 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g05942 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g08776 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g12241 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g17173 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g19043 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g21587 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g21662 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g32601 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g45659 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g49412 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g50065 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g17147 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g30416 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e039026_P001 OTP82, Zm00001e039026 Pentatricopeptide repeat-containing protein At5g48910... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 271 319
IPR002885 Pentatricopeptide_repeat 573 620
IPR002885 Pentatricopeptide_repeat 123 169
IPR002885 Pentatricopeptide_repeat 22 68
IPR002885 Pentatricopeptide_repeat 371 420
IPR002885 Pentatricopeptide_repeat 472 520
IPR002885 Pentatricopeptide_repeat 84 119
IPR032867 DYW_dom 747 871
No external refs found!