Aliases : PA200
Description : Proteasome activator subunit 4 OS=Arabidopsis thaliana (sp|f4jc97|psme4_arath : 362.0)
Gene families : OG0001792 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001792_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: MA_51487g0010 | |
| Cluster | HCCA: Cluster_241 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT3G13330 | PA200 | proteasome activating protein 200 | 0.03 | OrthoFinder output from all 47 species | |
| Ala_g02718 | PA200 | proteasome core particle assembly factor *(PA200) &... | 0.03 | OrthoFinder output from all 47 species | |
| Als_g22319 | PA200 | proteasome core particle assembly factor *(PA200) &... | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene62923.t1 | PA200, Aspi01Gene62923 | proteasome core particle assembly factor *(PA200) &... | 0.04 | OrthoFinder output from all 47 species | |
| Azfi_s0197.g057334 | PA200 | proteasome core particle assembly factor *(PA200) &... | 0.02 | OrthoFinder output from all 47 species | |
| Cba_g13867 | PA200 | proteasome core particle assembly factor *(PA200) &... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.17G047600.1 | PA200, Ceric.17G047600 | proteasome core particle assembly factor *(PA200) &... | 0.05 | OrthoFinder output from all 47 species | |
| Cre14.g628702 | PA200 | Proteasome activator subunit 4 OS=Arabidopsis thaliana | 0.02 | OrthoFinder output from all 47 species | |
| Gb_28178 | PA200 | Proteasome activator subunit 4 OS=Arabidopsis thaliana... | 0.02 | OrthoFinder output from all 47 species | |
| Len_g11444 | PA200 | proteasome core particle assembly factor *(PA200) &... | 0.04 | OrthoFinder output from all 47 species | |
| Lfl_g35781 | PA200 | proteasome core particle assembly factor *(PA200) &... | 0.02 | OrthoFinder output from all 47 species | |
| Nbi_g05013 | PA200 | proteasome core particle assembly factor *(PA200) &... | 0.06 | OrthoFinder output from all 47 species | |
| Ore_g17276 | PA200 | proteasome core particle assembly factor *(PA200) &... | 0.02 | OrthoFinder output from all 47 species | |
| Pir_g13061 | PA200 | proteasome core particle assembly factor *(PA200) &... | 0.03 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0068.g016437 | PA200 | proteasome core particle assembly factor *(PA200) &... | 0.02 | OrthoFinder output from all 47 species | |
| Smo440226 | PA200 | Proteasome activator subunit 4 OS=Arabidopsis thaliana | 0.03 | OrthoFinder output from all 47 species | |
| Spa_g07611 | PA200 | proteasome core particle assembly factor *(PA200) &... | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e031009_P002 | PA200, Zm00001e031009 | Proteasome activator subunit 4 OS=Arabidopsis thaliana... | 0.02 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000184 | nuclear-transcribed mRNA catabolic process, nonsense-mediated decay | IEP | HCCA |
| BP | GO:0000956 | nuclear-transcribed mRNA catabolic process | IEP | HCCA |
| MF | GO:0003677 | DNA binding | IEP | HCCA |
| MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEP | HCCA |
| MF | GO:0004386 | helicase activity | IEP | HCCA |
| MF | GO:0004812 | aminoacyl-tRNA ligase activity | IEP | HCCA |
| MF | GO:0004819 | glutamine-tRNA ligase activity | IEP | HCCA |
| CC | GO:0005737 | cytoplasm | IEP | HCCA |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
| BP | GO:0006351 | DNA-templated transcription | IEP | HCCA |
| BP | GO:0006399 | tRNA metabolic process | IEP | HCCA |
| BP | GO:0006401 | RNA catabolic process | IEP | HCCA |
| BP | GO:0006402 | mRNA catabolic process | IEP | HCCA |
| BP | GO:0006418 | tRNA aminoacylation for protein translation | IEP | HCCA |
| BP | GO:0006425 | glutaminyl-tRNA aminoacylation | IEP | HCCA |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
| BP | GO:0006807 | nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0006886 | intracellular protein transport | IEP | HCCA |
| BP | GO:0008152 | metabolic process | IEP | HCCA |
| MF | GO:0008270 | zinc ion binding | IEP | HCCA |
| BP | GO:0009892 | negative regulation of metabolic process | IEP | HCCA |
| BP | GO:0009987 | cellular process | IEP | HCCA |
| BP | GO:0010605 | negative regulation of macromolecule metabolic process | IEP | HCCA |
| BP | GO:0010629 | negative regulation of gene expression | IEP | HCCA |
| BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
| BP | GO:0016071 | mRNA metabolic process | IEP | HCCA |
| MF | GO:0016779 | nucleotidyltransferase activity | IEP | HCCA |
| MF | GO:0016875 | ligase activity, forming carbon-oxygen bonds | IEP | HCCA |
| BP | GO:0019439 | aromatic compound catabolic process | IEP | HCCA |
| CC | GO:0030117 | membrane coat | IEP | HCCA |
| BP | GO:0032774 | RNA biosynthetic process | IEP | HCCA |
| MF | GO:0034062 | 5'-3' RNA polymerase activity | IEP | HCCA |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0034655 | nucleobase-containing compound catabolic process | IEP | HCCA |
| BP | GO:0034660 | ncRNA metabolic process | IEP | HCCA |
| BP | GO:0043038 | amino acid activation | IEP | HCCA |
| BP | GO:0043039 | tRNA aminoacylation | IEP | HCCA |
| BP | GO:0043170 | macromolecule metabolic process | IEP | HCCA |
| BP | GO:0044237 | cellular metabolic process | IEP | HCCA |
| BP | GO:0044238 | primary metabolic process | IEP | HCCA |
| BP | GO:0044265 | cellular macromolecule catabolic process | IEP | HCCA |
| BP | GO:0044270 | cellular nitrogen compound catabolic process | IEP | HCCA |
| BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
| BP | GO:0046700 | heterocycle catabolic process | IEP | HCCA |
| BP | GO:0048519 | negative regulation of biological process | IEP | HCCA |
| BP | GO:0071704 | organic substance metabolic process | IEP | HCCA |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
| BP | GO:0097659 | nucleic acid-templated transcription | IEP | HCCA |
| MF | GO:0097747 | RNA polymerase activity | IEP | HCCA |
| MF | GO:0140098 | catalytic activity, acting on RNA | IEP | HCCA |
| MF | GO:0140101 | catalytic activity, acting on a tRNA | IEP | HCCA |
| MF | GO:0140640 | catalytic activity, acting on a nucleic acid | IEP | HCCA |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
| BP | GO:1901361 | organic cyclic compound catabolic process | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR032430 | Blm10_mid | 98 | 295 |
| No external refs found! |
