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  5. MA_6279308g0010

MA_6279308g0010 (SOC1, AGL20, ATSOC1)


Aliases : SOC1, AGL20, ATSOC1

Description : transcription factor (MADS/AGL)


Gene families : OG0000022 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_6279308g0010

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00266470 SOC1, AGL20,... RNA biosynthesis.transcriptional activation.MADS box... 0.02 OrthoFinder output from all 47 species
AMTR_s00001p00267050 AGL6,... RNA biosynthesis.transcriptional activation.MADS box... 0.03 OrthoFinder output from all 47 species
AMTR_s00025p00244880 AGL61, DIA,... RNA biosynthesis.transcriptional activation.MADS box... 0.02 OrthoFinder output from all 47 species
AMTR_s00071p00193200 STK, AGL11,... RNA biosynthesis.transcriptional activation.MADS box... 0.03 OrthoFinder output from all 47 species
AMTR_s00071p00198970 XAL1, AGL12,... RNA biosynthesis.transcriptional activation.MADS box... 0.03 OrthoFinder output from all 47 species
AMTR_s00109p00015260 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.04 OrthoFinder output from all 47 species
AT1G24260 AGL9, SEP3 K-box region and MADS-box transcription factor family protein 0.03 OrthoFinder output from all 47 species
AT1G26310 AGL10, CAL1, CAL K-box region and MADS-box transcription factor family protein 0.02 OrthoFinder output from all 47 species
AT1G69120 AGL7, AP1 K-box region and MADS-box transcription factor family protein 0.04 OrthoFinder output from all 47 species
AT2G42830 SHP2, AGL5 K-box region and MADS-box transcription factor family protein 0.03 OrthoFinder output from all 47 species
AT2G45650 AGL6 AGAMOUS-like 6 0.03 OrthoFinder output from all 47 species
AT3G02310 AGL4, SEP2 K-box region and MADS-box transcription factor family protein 0.04 OrthoFinder output from all 47 species
AT4G11880 AGL14 AGAMOUS-like 14 0.05 OrthoFinder output from all 47 species
AT4G24540 AGL24 AGAMOUS-like 24 0.03 OrthoFinder output from all 47 species
AT5G15800 AGL2, SEP1 K-box region and MADS-box transcription factor family protein 0.06 OrthoFinder output from all 47 species
AT5G20240 PI K-box region and MADS-box transcription factor family protein 0.05 OrthoFinder output from all 47 species
AT5G60910 AGL8, FUL AGAMOUS-like 8 0.03 OrthoFinder output from all 47 species
Adi_g020010 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g06477 AGL16 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g36405 SHP2, AGL5 MADS/AGL-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g18204 AGL21 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g33966 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene15809.t1 SHP2, AGL5,... MADS/AGL-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene15812.t2 AGL13, Aspi01Gene15812 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene17822.t1 SHP2, AGL5,... MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene17826.t1 SHP2, AGL5,... MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene19451.t1 SOC1, AGL20,... MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene44552.t1 AGL13, Aspi01Gene44552 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene68020.t1 AGL6, Aspi01Gene68020 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0003.g007710 AGL6 MADS/AGL-type transcription factor & original... 0.05 OrthoFinder output from all 47 species
Azfi_s0009.g011735 STK, AGL11 MADS/AGL-type transcription factor & original... 0.04 OrthoFinder output from all 47 species
Azfi_s0038.g026346 SHP2, AGL5 MADS/AGL-type transcription factor & original... 0.05 OrthoFinder output from all 47 species
Ceric.12G051800.1 GL19, AGL19,... MADS/AGL-type transcription factor & original... 0.02 OrthoFinder output from all 47 species
Ceric.27G042700.1 AGL7, AP1,... MADS/AGL-type transcription factor & original... 0.02 OrthoFinder output from all 47 species
Dac_g12204 GL19, AGL19 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g12724 AGL16 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g08051 AGL16 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g10603 AGL42 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g10747 AGL8, FUL MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g47939 AGL10, CAL1, CAL MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g32401 AGL10, CAL1, CAL not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01008560001 SOC1, AGL20, ATSOC1 RNA biosynthesis.transcriptional activation.MADS box... 0.04 OrthoFinder output from all 47 species
GSVIVT01012110001 AGL32, TT16, ABS RNA biosynthesis.transcriptional activation.MADS box... 0.03 OrthoFinder output from all 47 species
GSVIVT01019883001 GL19, AGL19 RNA biosynthesis.transcriptional activation.MADS box... 0.03 OrthoFinder output from all 47 species
GSVIVT01026207001 AGL32, TT16, ABS RNA biosynthesis.transcriptional activation.MADS box... 0.03 OrthoFinder output from all 47 species
GSVIVT01027577001 AGL6 RNA biosynthesis.transcriptional activation.MADS box... 0.03 OrthoFinder output from all 47 species
GSVIVT01033253001 AGL15 RNA biosynthesis.transcriptional activation.MADS box... 0.02 OrthoFinder output from all 47 species
GSVIVT01038474001 AGL16 RNA biosynthesis.transcriptional activation.MADS box... 0.02 OrthoFinder output from all 47 species
Gb_03068 AGL16 transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
Gb_16301 STK, AGL11 transcription factor (MADS/AGL) 0.04 OrthoFinder output from all 47 species
Gb_19897 AGL16 MADS-box transcription factor 27 OS=Oryza sativa subsp.... 0.05 OrthoFinder output from all 47 species
LOC_Os01g10504.1 SHP2, AGL5,... transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
LOC_Os02g45770.1 AGL6, LOC_Os02g45770 transcription factor (MADS/AGL) 0.04 OrthoFinder output from all 47 species
LOC_Os03g11614.1 AGL2, SEP1,... transcription factor (MADS/AGL) 0.04 OrthoFinder output from all 47 species
LOC_Os03g54160.1 AGL7, AP1, LOC_Os03g54160 transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
LOC_Os04g23910.1 AGL16, LOC_Os04g23910 transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
LOC_Os05g11380.1 STK, AGL11,... transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
LOC_Os06g01890.1 SOC1, AGL20,... transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
LOC_Os06g22760.1 AGL61, DIA,... transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
LOC_Os06g23950.1 LOC_Os06g23950 transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
LOC_Os06g23980.1 AGL16, LOC_Os06g23980 MADS-box transcription factor 27 OS=Oryza sativa subsp.... 0.03 OrthoFinder output from all 47 species
LOC_Os12g31748.2 AGL8, FUL, LOC_Os12g31748 transcription factor (MADS/AGL) 0.04 OrthoFinder output from all 47 species
Len_g16023 GL19, AGL19 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Len_g22235 SOC1, AGL20, ATSOC1 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Len_g29992 STK, AGL11 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Len_g43702 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g52703 SHP2, AGL5 MADS/AGL-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g16827 AGL21 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g36481 No alias MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g37644 AGL21 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
MA_10195631g0010 SOC1, AGL20, ATSOC1 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_175522g0010 SOC1, AGL20, ATSOC1 transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
MA_19296g0010 AGL9, SEP3 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
MA_2986g0010 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
MA_6042439g0010 AGL9, SEP3 transcription factor (MADS/AGL) 0.04 OrthoFinder output from all 47 species
MA_75656g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_8748850g0010 AGL24 transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
MA_94049g0010 AGL9, SEP3 transcription factor (MADS/AGL) 0.04 OrthoFinder output from all 47 species
MA_9841429g0010 AGL9, SEP3 transcription factor (MADS/AGL) 0.05 OrthoFinder output from all 47 species
Msp_g09451 AGL21 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g11231 GL19, AGL19 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g11366 AGL3, SEP4 MADS/AGL-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g18297 AGL21 MADS/AGL-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g44138 SHP2, AGL5 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g02948 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g05105 AGL16 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g09567 AGL16 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g09891 AGL66 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g17602 AGL3, SEP4 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g55140 GL19, AGL19 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g55983 AGL3, SEP4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000222 AGL33 MADS/AGL-type transcription factor & original... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0004.g002217 AGL15 MADS/AGL-type transcription factor & original... 0.04 OrthoFinder output from all 47 species
Sam_g26914 No alias MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g50341 No alias MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Smo121275 AGL7, AP1 RNA biosynthesis.transcriptional activation.MADS box... 0.02 OrthoFinder output from all 47 species
Solyc01g080785.1.1 AGL61, DIA,... transcription factor (MADS/AGL) 0.04 OrthoFinder output from all 47 species
Solyc01g106710.1.1 AGL62, Solyc01g106710 component MED19 of head module of MEDIATOR transcription... 0.03 OrthoFinder output from all 47 species
Solyc02g089210.4.1 AGL7, AP1, Solyc02g089210 transcription factor (MADS/AGL) 0.05 OrthoFinder output from all 47 species
Solyc02g091550.2.1 AGL21, Solyc02g091550 transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
Solyc04g078300.3.1 AGL104, Solyc04g078300 transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
Solyc05g012020.4.1 AGL2, SEP1,... transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
Solyc06g069430.3.1 AGL8, FUL, Solyc06g069430 transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
Solyc10g080030.2.1 AGL18, Solyc10g080030 transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
Solyc12g056460.3.1 SOC1, AGL20,... transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
Spa_g14680 AGL16 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g17806 AGL10, CAL1, CAL MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g31312 AGL2, SEP1 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g27845 GL19, AGL19 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e003670_P002 AGL79, Zm00001e003670 transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
Zm00001e005705_P004 AGL7, AP1, Zm00001e005705 transcription factor (MADS/AGL) 0.04 OrthoFinder output from all 47 species
Zm00001e006950_P001 AGL32, TT16,... transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
Zm00001e012026_P002 AGL7, AP1, Zm00001e012026 transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
Zm00001e015728_P001 AGL16, Zm00001e015728 transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
Zm00001e016529_P004 SHP2, AGL5,... transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
Zm00001e016964_P001 GL19, AGL19,... transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
Zm00001e031267_P003 SHP2, AGL5,... transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
Zm00001e033144_P001 AGL29, Zm00001e033144 transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0046983 protein dimerization activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0008150 biological_process IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0008171 O-methyltransferase activity IEP HCCA
MF GO:0008374 O-acyltransferase activity IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0055085 transmembrane transport IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR002100 TF_MADSbox 10 57
No external refs found!