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  5. MA_65574g0010

MA_65574g0010 (emb2394)


Aliases : emb2394

Description : 50S ribosomal protein L6, chloroplastic OS=Spinacia oleracea (sp|p82193|rk6_spiol : 112.0)


Gene families : OG0003589 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003589_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_65574g0010

Target Alias Description ECC score Gene Family Method Actions
AT1G05190 emb2394 Ribosomal protein L6 family 0.04 OrthoFinder output from all 47 species
Aev_g41502 emb2394 component *(uL6c) of large plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Ala_g09001 emb2394 component *(uL6c) of large plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Aob_g07004 emb2394 component *(uL6c) of large plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Azfi_s0454.g071297 emb2394 component *(uL6c) of large plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Ceric.25G034500.1 emb2394, Ceric.25G034500 component *(uL6c) of large plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Cre09.g415950 emb2394 Protein biosynthesis.organelle translation... 0.04 OrthoFinder output from all 47 species
Dcu_g12981 emb2394 component *(uL6c) of large plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
GSVIVT01030599001 emb2394 Protein biosynthesis.organelle translation... 0.05 OrthoFinder output from all 47 species
Gb_27916 emb2394 component psRPL6 of large ribosomal subunit proteome 0.05 OrthoFinder output from all 47 species
LOC_Os03g24020.1 emb2394, LOC_Os03g24020 component psRPL6 of large ribosomal subunit proteome 0.06 OrthoFinder output from all 47 species
LOC_Os03g54040.1 emb2394, LOC_Os03g54040 component psRPL6 of large ribosomal subunit proteome 0.06 OrthoFinder output from all 47 species
Mp1g03630.1 emb2394 component psRPL6 of large ribosomal subunit proteome 0.04 OrthoFinder output from all 47 species
Nbi_g02779 emb2394 component *(uL6c) of large plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0038.g011918 emb2394 component *(uL6c) of large plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Solyc12g100160.3.1 emb2394, Solyc12g100160 component psRPL6 of large ribosomal subunit proteome 0.02 OrthoFinder output from all 47 species
Spa_g11042 emb2394 component *(uL6c) of large plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Zm00001e001699_P002 emb2394, Zm00001e001699 component psRPL6 of large ribosomal subunit proteome 0.08 OrthoFinder output from all 47 species
Zm00001e038182_P002 emb2394, Zm00001e038182 component psRPL6 of large ribosomal subunit proteome 0.11 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
MF GO:0019843 rRNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005525 GTP binding IEP HCCA
BP GO:0006605 protein targeting IEP HCCA
BP GO:0006612 protein targeting to membrane IEP HCCA
BP GO:0006613 cotranslational protein targeting to membrane IEP HCCA
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0015031 protein transport IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
BP GO:0045047 protein targeting to ER IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0051668 localization within membrane IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0070972 protein localization to endoplasmic reticulum IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP HCCA
BP GO:0072657 protein localization to membrane IEP HCCA
BP GO:0090150 establishment of protein localization to membrane IEP HCCA
InterPro domains Description Start Stop
IPR020040 Ribosomal_L6_a/b-dom 76 145
No external refs found!