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  5. MA_785826g0010

MA_785826g0010


Description : Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana (sp|q9sy02|pp301_arath : 502.0)


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_785826g0010

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00038p00071780 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g26540... 0.02 OrthoFinder output from all 47 species
AT1G09410 No alias pentatricopeptide (PPR) repeat-containing protein 0.03 OrthoFinder output from all 47 species
AT1G17630 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.05 OrthoFinder output from all 47 species
AT2G44880 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.03 OrthoFinder output from all 47 species
AT3G01580 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 OrthoFinder output from all 47 species
AT4G21300 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from all 47 species
AT4G37170 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
AT5G09950 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from all 47 species
AT5G40405 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 OrthoFinder output from all 47 species
AT5G40410 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g004364 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g034749 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g099295 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g11424 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g26222 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g31160 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g33506 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g04417 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g07390 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g14128 CRR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g18934 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g18957 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g40180 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g55125 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g27006 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g27260 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g32957 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g02808 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g20910 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0008.g011663 No alias not classified & original description: CDS=1-3036 0.03 OrthoFinder output from all 47 species
Azfi_s0010.g012398 No alias not classified & original description: CDS=1-3681 0.02 OrthoFinder output from all 47 species
Azfi_s0081.g038640 OTP86 not classified & original description: CDS=63-2522 0.03 OrthoFinder output from all 47 species
Azfi_s0515.g074976 No alias not classified & original description: CDS=1-2373 0.03 OrthoFinder output from all 47 species
Azfi_s1890.g107856 No alias not classified & original description: CDS=1-3162 0.03 OrthoFinder output from all 47 species
Cba_g04075 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g06575 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g10642 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g34428 CRR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.10G043800.1 Ceric.10G043800 not classified & original description: pacid=50613534... 0.03 OrthoFinder output from all 47 species
Ceric.13G010900.1 Ceric.13G010900 not classified & original description: pacid=50636623... 0.03 OrthoFinder output from all 47 species
Ceric.13G076400.1 Ceric.13G076400 not classified & original description: pacid=50635248... 0.03 OrthoFinder output from all 47 species
Ceric.25G002100.1 Ceric.25G002100 not classified & original description: pacid=50593112... 0.03 OrthoFinder output from all 47 species
Ceric.26G057900.1 CRR22, Ceric.26G057900 not classified & original description: pacid=50598962... 0.04 OrthoFinder output from all 47 species
Ceric.28G015300.1 Ceric.28G015300 not classified & original description: pacid=50570535... 0.03 OrthoFinder output from all 47 species
Ceric.30G023200.1 Ceric.30G023200 not classified & original description: pacid=50609019... 0.03 OrthoFinder output from all 47 species
Ceric.34G057600.1 Ceric.34G057600 not classified & original description: pacid=50623573... 0.05 OrthoFinder output from all 47 species
Cre12.g483700 OSB4 Cell cycle.organelle machineries.DNA... 0.02 OrthoFinder output from all 47 species
Dde_g28512 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g40573 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g12128 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g13211 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g19916 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g24510 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g24725 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01008407001 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 OrthoFinder output from all 47 species
GSVIVT01015087001 CRR2 Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species
GSVIVT01018098001 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 OrthoFinder output from all 47 species
GSVIVT01018922001 No alias Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
Gb_00204 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.04 OrthoFinder output from all 47 species
Gb_02544 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.07 OrthoFinder output from all 47 species
Gb_03626 OTP84 Pentatricopeptide repeat-containing protein At3g57430,... 0.04 OrthoFinder output from all 47 species
Gb_04385 No alias RNA editing factor (CRR21) 0.05 OrthoFinder output from all 47 species
Gb_04611 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.06 OrthoFinder output from all 47 species
Gb_04894 CRR22 Pentatricopeptide repeat-containing protein At3g03580... 0.05 OrthoFinder output from all 47 species
Gb_05648 No alias Pentatricopeptide repeat-containing protein At5g16860... 0.04 OrthoFinder output from all 47 species
Gb_10903 No alias Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
Gb_17095 No alias Putative pentatricopeptide repeat-containing protein... 0.06 OrthoFinder output from all 47 species
Gb_27437 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.04 OrthoFinder output from all 47 species
Gb_28030 No alias Pentatricopeptide repeat-containing protein At1g08070,... 0.05 OrthoFinder output from all 47 species
Gb_31794 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.05 OrthoFinder output from all 47 species
Gb_32448 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 OrthoFinder output from all 47 species
Gb_33134 REME1 Pentatricopeptide repeat-containing protein At4g02750... 0.05 OrthoFinder output from all 47 species
Gb_34236 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.04 OrthoFinder output from all 47 species
Gb_37624 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.03 OrthoFinder output from all 47 species
Gb_38441 OTP84 Pentatricopeptide repeat-containing protein At3g57430,... 0.06 OrthoFinder output from all 47 species
Gb_39514 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.03 OrthoFinder output from all 47 species
LOC_Os03g56400.1 LOC_Os03g56400 Pentatricopeptide repeat-containing protein At2g22070... 0.02 OrthoFinder output from all 47 species
LOC_Os04g09530.1 LOC_Os04g09530 RNA editing factor (BLX) 0.02 OrthoFinder output from all 47 species
LOC_Os04g14130.1 LOC_Os04g14130 Pentatricopeptide repeat-containing protein At5g16860... 0.02 OrthoFinder output from all 47 species
Len_g05268 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g45824 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g54965 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g55821 CRR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_445207g0010 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.03 OrthoFinder output from all 47 species
MA_84538g0010 EMB2261 Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
Msp_g03529 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g17377 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g01896 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g06871 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g19660 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g25357 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g33905 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g12523 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g13570 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g30285 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g02982 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g53562 VAC1, ECB2, ATECB2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000505 CRR2 not classified & original description: CDS=1-1110 0.02 OrthoFinder output from all 47 species
Sam_g16371 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g29120 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo92492 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 OrthoFinder output from all 47 species
Smo98955 CRR22 Pentatricopeptide repeat-containing protein At2g13600... 0.03 OrthoFinder output from all 47 species
Spa_g20734 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g17154 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g29865 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e028330_P001 PTAC9, OSB2,... ssDNA-binding protein (OSB). TAC9 cofactor of... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003743 translation initiation factor activity IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 261 290
IPR002885 Pentatricopeptide_repeat 394 442
IPR002885 Pentatricopeptide_repeat 99 147
IPR002885 Pentatricopeptide_repeat 292 336
IPR032867 DYW_dom 568 626
IPR002885 Pentatricopeptide_repeat 468 493
IPR002885 Pentatricopeptide_repeat 535 563
IPR002885 Pentatricopeptide_repeat 368 393
IPR002885 Pentatricopeptide_repeat 202 232
IPR002885 Pentatricopeptide_repeat 174 201
No external refs found!