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  5. MA_8499g0030

MA_8499g0030


Description : Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana (sp|q9svp7|pp307_arath : 528.0)


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_8499g0030

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00272900 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.01 OrthoFinder output from all 47 species
AMTR_s00077p00166950 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g14730... 0.03 OrthoFinder output from all 47 species
AT3G25970 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 OrthoFinder output from all 47 species
Adi_g096701 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g118106 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g24408 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g36480 No alias not classified & original description: none 0.1 OrthoFinder output from all 47 species
Als_g03859 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g30789 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g34282 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aop_g23786 MEF19 ssDNA-binding protein *(OSB) & original description: none 0.01 OrthoFinder output from all 47 species
Aop_g23989 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g23996 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aop_g23997 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene04308.t1 Aspi01Gene04308 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene13090.t2 Aspi01Gene13090 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene22525.t1 REME1, Aspi01Gene22525 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene34516.t1 Aspi01Gene34516 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene35082.t1 Aspi01Gene35082 ssDNA-binding protein *(OSB) & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene38233.t1 Aspi01Gene38233 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene57016.t1 Aspi01Gene57016 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene70773.t1 OTP84, Aspi01Gene70773 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0010.g012363 No alias not classified & original description: CDS=1-2442 0.01 OrthoFinder output from all 47 species
Azfi_s0090.g042774 No alias not classified & original description: CDS=1-2433 0.03 OrthoFinder output from all 47 species
Azfi_s0184.g056534 OTP84 not classified & original description: CDS=1-2040 0.02 OrthoFinder output from all 47 species
Azfi_s0400.g068228 No alias not classified & original description: CDS=1-1902 0.01 OrthoFinder output from all 47 species
Azfi_s0934.g093088 No alias not classified & original description: CDS=1-1296 0.03 OrthoFinder output from all 47 species
Cba_g77978 OTP82 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.21G030500.1 Ceric.21G030500 not classified & original description: pacid=50603713... 0.03 OrthoFinder output from all 47 species
Ceric.26G053700.1 Ceric.26G053700 not classified & original description: pacid=50599734... 0.03 OrthoFinder output from all 47 species
Dac_g08179 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g22650 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dac_g28137 REME1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g16105 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g18756 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g18837 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g21285 DOT4 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g21312 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Dde_g21670 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g25000 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Dde_g28512 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Dde_g30250 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Dde_g35118 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Dde_g40573 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01029252001 PTAC9, OSB2 RNA biosynthesis.organelle machineries.RNA polymerase... 0.04 OrthoFinder output from all 47 species
Gb_27891 OTP86 RNA editing factor (OTP86) 0.01 OrthoFinder output from all 47 species
Lfl_g25262 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g31283 CRR22 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000685 No alias not classified & original description: CDS=1-2475 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000780 No alias not classified & original description: CDS=1-3003 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0002.g001288 No alias not classified & original description: CDS=1-3081 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0008.g003970 No alias not classified & original description: CDS=1-3009 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0013.g005870 No alias not classified & original description: CDS=1-2601 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0013.g005912 No alias not classified & original description: CDS=1-3210 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0024.g009016 No alias not classified & original description: CDS=1-2955 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0034.g011201 No alias not classified & original description: CDS=1-2019 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0036.g011714 VAC1, ECB2, ATECB2 not classified & original description: CDS=1-2064 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0039.g012266 No alias not classified & original description: CDS=1-3753 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0050.g013864 CRR22 not classified & original description: CDS=1-2397 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0068.g016434 No alias not classified & original description: CDS=1-1746 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0086.g018386 VAC1, ECB2, ATECB2 not classified & original description: CDS=1-2118 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0088.g018619 No alias not classified & original description: CDS=1-2157 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0095.g019284 No alias not classified & original description: CDS=34-390 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0100.g019669 OTP84 not classified & original description: CDS=1-1971 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0109.g020573 No alias not classified & original description: CDS=184-1233 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0111.g020712 EMB2758 not classified & original description: CDS=1-2046 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s3367.g028731 No alias not classified & original description: CDS=2473-3459 0.01 OrthoFinder output from all 47 species
Tin_g35068 CRR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004497 monooxygenase activity IEP HCCA
MF GO:0005506 iron ion binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
BP GO:0006020 inositol metabolic process IEP HCCA
BP GO:0006066 alcohol metabolic process IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0016052 carbohydrate catabolic process IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP HCCA
BP GO:0019310 inositol catabolic process IEP HCCA
BP GO:0019751 polyol metabolic process IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044262 cellular carbohydrate metabolic process IEP HCCA
BP GO:0044275 cellular carbohydrate catabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0044282 small molecule catabolic process IEP HCCA
BP GO:0046164 alcohol catabolic process IEP HCCA
BP GO:0046174 polyol catabolic process IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
MF GO:0050113 inositol oxygenase activity IEP HCCA
BP GO:0055114 obsolete oxidation-reduction process IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
BP GO:1901615 organic hydroxy compound metabolic process IEP HCCA
BP GO:1901616 organic hydroxy compound catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 212 260
IPR002885 Pentatricopeptide_repeat 415 463
IPR002885 Pentatricopeptide_repeat 314 361
IPR002885 Pentatricopeptide_repeat 517 564
IPR002885 Pentatricopeptide_repeat 620 665
IPR002885 Pentatricopeptide_repeat 288 313
IPR002885 Pentatricopeptide_repeat 112 136
IPR002885 Pentatricopeptide_repeat 693 716
IPR002885 Pentatricopeptide_repeat 592 617
No external refs found!