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  5. MA_87646g0010

MA_87646g0010


Description : RNA editing factor (MEF13)


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_87646g0010

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00268120 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g29760,... 0.03 OrthoFinder output from all 47 species
AMTR_s00029p00062420 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g20730... 0.04 OrthoFinder output from all 47 species
AMTR_s00029p00230160 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
AMTR_s00039p00130050 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
AMTR_s00092p00064890 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g21065... 0.03 OrthoFinder output from all 47 species
AT1G50270 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.06 OrthoFinder output from all 47 species
AT2G44880 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.04 OrthoFinder output from all 47 species
Adi_g005327 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g005707 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g111267 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g19013 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g33541 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g13608 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g37786 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g38061 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g29889 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01000072001 No alias Pentatricopeptide repeat-containing protein At3g05340... 0.04 OrthoFinder output from all 47 species
GSVIVT01012938001 SLO1 Pentatricopeptide repeat-containing protein At2g29760,... 0.05 OrthoFinder output from all 47 species
GSVIVT01016874001 OTP82 Pentatricopeptide repeat-containing protein At1g08070,... 0.04 OrthoFinder output from all 47 species
GSVIVT01017075001 OTP82 Pentatricopeptide repeat-containing protein At3g12770... 0.05 OrthoFinder output from all 47 species
GSVIVT01023860001 REME1 Pentatricopeptide repeat-containing protein At2g03880,... 0.04 OrthoFinder output from all 47 species
GSVIVT01029885001 No alias Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
GSVIVT01033863001 No alias RNA processing.organelle machineries.RNA... 0.03 OrthoFinder output from all 47 species
Gb_02065 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.05 OrthoFinder output from all 47 species
Gb_03474 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.04 OrthoFinder output from all 47 species
Gb_04828 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.04 OrthoFinder output from all 47 species
Gb_04844 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.04 OrthoFinder output from all 47 species
Gb_11581 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.04 OrthoFinder output from all 47 species
Gb_11981 REME1 Pentatricopeptide repeat-containing protein At3g24000,... 0.04 OrthoFinder output from all 47 species
Gb_16070 CRR22 Pentatricopeptide repeat-containing protein At2g27610... 0.04 OrthoFinder output from all 47 species
Gb_16288 CRR22 RNA editing factor (OTP82) 0.04 OrthoFinder output from all 47 species
Gb_18979 OTP84 Pentatricopeptide repeat-containing protein At4g02750... 0.05 OrthoFinder output from all 47 species
Gb_21237 REME1 Putative pentatricopeptide repeat-containing protein... 0.05 OrthoFinder output from all 47 species
Gb_27377 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.05 OrthoFinder output from all 47 species
Gb_28765 REME1 Pentatricopeptide repeat-containing protein At4g02750... 0.06 OrthoFinder output from all 47 species
Gb_28770 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 OrthoFinder output from all 47 species
Gb_32439 CRR22 Pentatricopeptide repeat-containing protein At2g22070... 0.04 OrthoFinder output from all 47 species
Gb_33135 CRR22 Pentatricopeptide repeat-containing protein At4g13650... 0.05 OrthoFinder output from all 47 species
Gb_33726 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.04 OrthoFinder output from all 47 species
Gb_34963 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.05 OrthoFinder output from all 47 species
Gb_36676 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.06 OrthoFinder output from all 47 species
Gb_38751 No alias Putative pentatricopeptide repeat-containing protein... 0.05 OrthoFinder output from all 47 species
Gb_40381 No alias Putative pentatricopeptide repeat-containing protein... 0.05 OrthoFinder output from all 47 species
Gb_41341 CRR22 Pentatricopeptide repeat-containing protein DOT4,... 0.05 OrthoFinder output from all 47 species
LOC_Os03g13230.1 LOC_Os03g13230 Pentatricopeptide repeat-containing protein At4g37170... 0.03 OrthoFinder output from all 47 species
LOC_Os03g63260.3 LOC_Os03g63260 Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
LOC_Os04g41120.1 LOC_Os04g41120 Pentatricopeptide repeat-containing protein At4g38010... 0.03 OrthoFinder output from all 47 species
LOC_Os08g25280.1 LOC_Os08g25280 Pentatricopeptide repeat-containing protein At4g39530... 0.03 OrthoFinder output from all 47 species
LOC_Os08g28830.1 LOC_Os08g28830 Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
Len_g09780 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g18530 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g30637 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_103380g0010 No alias Pentatricopeptide repeat-containing protein At3g24000,... 0.05 OrthoFinder output from all 47 species
MA_109016g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.06 OrthoFinder output from all 47 species
MA_109016g0020 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.05 OrthoFinder output from all 47 species
MA_115669g0020 EMB2758 Pentatricopeptide repeat-containing protein DOT4,... 0.04 OrthoFinder output from all 47 species
MA_12023g0010 No alias RNA editing factor (MEF9) 0.04 OrthoFinder output from all 47 species
MA_18277g0010 CRR22 Pentatricopeptide repeat-containing protein At4g39530... 0.04 OrthoFinder output from all 47 species
MA_43497g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.06 OrthoFinder output from all 47 species
MA_502206g0010 No alias Pentatricopeptide repeat-containing protein At1g20230... 0.05 OrthoFinder output from all 47 species
MA_640827g0010 OTP84 Pentatricopeptide repeat-containing protein At4g02750... 0.04 OrthoFinder output from all 47 species
MA_72442g0020 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.06 OrthoFinder output from all 47 species
MA_9354530g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.04 OrthoFinder output from all 47 species
Smo17005 PDE247, CLB19 Pentatricopeptide repeat-containing protein At2g17210... 0.05 OrthoFinder output from all 47 species
Solyc01g091610.1.1 Solyc01g091610 Pentatricopeptide repeat-containing protein At2g27610... 0.05 OrthoFinder output from all 47 species
Solyc02g070710.3.1 Solyc02g070710 Pentatricopeptide repeat-containing protein At3g20730... 0.05 OrthoFinder output from all 47 species
Solyc04g063300.3.1 Solyc04g063300 Pentatricopeptide repeat-containing protein At3g26540... 0.03 OrthoFinder output from all 47 species
Solyc07g042760.1.1 Solyc07g042760 Pentatricopeptide repeat-containing protein At4g31070,... 0.03 OrthoFinder output from all 47 species
Solyc07g053520.2.1 SLO1, Solyc07g053520 Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
Solyc10g008590.1.1 Solyc10g008590 Putative pentatricopeptide repeat-containing protein... 0.05 OrthoFinder output from all 47 species
Solyc11g005970.1.1 Solyc11g005970 Pentatricopeptide repeat-containing protein At3g24000,... 0.03 OrthoFinder output from all 47 species
Solyc12g099620.1.1 Solyc12g099620 Pentatricopeptide repeat-containing protein At4g32430,... 0.03 OrthoFinder output from all 47 species
Spa_g29031 REME1 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Tin_g44240 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e001007_P001 Zm00001e001007 Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
Zm00001e001918_P001 EMB2758, Zm00001e001918 Pentatricopeptide repeat-containing protein At4g33990... 0.03 OrthoFinder output from all 47 species
Zm00001e037600_P001 Zm00001e037600 Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 133 160
IPR002885 Pentatricopeptide_repeat 105 131
IPR002885 Pentatricopeptide_repeat 338 363
IPR002885 Pentatricopeptide_repeat 439 462
IPR002885 Pentatricopeptide_repeat 737 760
IPR002885 Pentatricopeptide_repeat 803 831
IPR032867 DYW_dom 835 959
IPR002885 Pentatricopeptide_repeat 666 705
IPR002885 Pentatricopeptide_repeat 364 411
IPR002885 Pentatricopeptide_repeat 263 310
IPR002885 Pentatricopeptide_repeat 464 512
IPR002885 Pentatricopeptide_repeat 566 611
IPR002885 Pentatricopeptide_repeat 162 209
No external refs found!