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  5. MA_89559g0010

MA_89559g0010 (AMS)


Aliases : AMS

Description : transcription factor (bHLH)


Gene families : OG0000267 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000267_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_89559g0010
Cluster HCCA: Cluster_136

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00100p00127090 AMS,... RNA biosynthesis.transcriptional activation.bHLH... 0.05 OrthoFinder output from all 47 species
Ala_g33809 ATBHLH029,... bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Als_g23813 ATBHLH029,... bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g08956 SCRM2, ICE2 transcriptional regulator *(DYT1/AMS) & original... 0.03 OrthoFinder output from all 47 species
Aop_g11432 ATBHLH029,... bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g68480 ATBHLH029,... bHLH-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Azfi_s0001.g000319 No alias bHLH-type transcription factor & original description: CDS=1-1284 0.06 OrthoFinder output from all 47 species
Cba_g27911 AMS bHLH-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Ceric.01G042200.1 Ceric.01G042200 bHLH-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Dac_g14460 No alias bHLH-type transcription factor & original description: none 0.01 OrthoFinder output from all 47 species
Ehy_g13184 No alias bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g15392 No alias bHLH-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
LOC_Os04g23550.1 LOC_Os04g23550 transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
Lfl_g04689 ATBHLH029,... bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
MA_28638g0010 No alias transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
MA_387150g0010 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
MA_439607g0010 SCRM2, ICE2 transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
MA_666536g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_780853g0010 ATBHLH029,... transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
Msp_g19168 No alias bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g02789 No alias bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g12042 ATBHLH029,... bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g18806 No alias bHLH-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g21966 No alias bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g31850 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g43590 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Pir_g14150 ATBHLH029,... bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pp3c13_14420V3.1 Pp3c13_14420 basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.01 OrthoFinder output from all 47 species
Spa_g08873 No alias bHLH-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g46311 AMS bHLH-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e008393_P001 ATBHLH029,... transcription factor (bHLH). iron uptake transcription factor FIT 0.02 OrthoFinder output from all 47 species
Zm00001e040186_P002 Zm00001e040186 transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
Zm00001e040675_P003 Zm00001e040675 transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0046983 protein dimerization activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0009987 cellular process IEP HCCA
BP GO:0010215 cellulose microfibril organization IEP HCCA
MF GO:0015267 channel activity IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
MF GO:0022803 passive transmembrane transporter activity IEP HCCA
BP GO:0030198 extracellular matrix organization IEP HCCA
CC GO:0031225 obsolete anchored component of membrane IEP HCCA
BP GO:0043062 extracellular structure organization IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
InterPro domains Description Start Stop
IPR011598 bHLH_dom 23 66
No external refs found!