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  5. MA_93349g0010

MA_93349g0010


Description : Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana (sp|q8w034|rnp1_arath : 227.0)


Gene families : OG0000120 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000120_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_93349g0010

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00049p00200350 evm_27.TU.AmTr_v1... Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AT5G40490 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.02 OrthoFinder output from all 47 species
Adi_g013860 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g018550 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g054785 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g060246 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g102181 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g116756 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g05289 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g38855 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g47700 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g02499 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g24129 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g50168 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g04352 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g04597 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g14658 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene42378.t2 Aspi01Gene42378 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0149.g053226 No alias not classified & original description: CDS=547-1935 0.03 OrthoFinder output from all 47 species
Cba_g09256 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g33385 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.04G042300.1 Ceric.04G042300 not classified & original description: pacid=50630995... 0.03 OrthoFinder output from all 47 species
Ceric.14G063200.1 Ceric.14G063200 not classified & original description: pacid=50633319... 0.04 OrthoFinder output from all 47 species
Ceric.35G060600.1 Ceric.35G060600 not classified & original description: pacid=50581737... 0.04 OrthoFinder output from all 47 species
Cre10.g428200 No alias No description available 0.03 OrthoFinder output from all 47 species
Dcu_g04585 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g21405 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g31601 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g03771 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g16526 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g16933 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01028394001 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
GSVIVT01030120001 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
GSVIVT01032402001 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Gb_35079 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Gb_39961 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
Len_g08463 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Len_g09242 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g17314 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g22774 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g12149 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g02719 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g03296 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g19415 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g35383 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g40736 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g44409 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g00523 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g05992 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g05996 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g09717 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g20108 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g29827 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g33245 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g56140 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000411 No alias not classified & original description: CDS=1-1413 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0054.g014264 No alias not classified & original description: CDS=1-1203 0.03 OrthoFinder output from all 47 species
Solyc07g045240.3.1 Solyc07g045240 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Solyc09g090520.3.1 Solyc09g090520 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Spa_g11285 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g21542 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g30731 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g07867 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e002844_P001 Zm00001e002844 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003743 translation initiation factor activity IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 112 170
IPR000504 RRM_dom 8 73
No external refs found!