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  5. MA_9360929g0010

MA_9360929g0010


Description : Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana (sp|q9svp7|pp307_arath : 687.0)


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_9360929g0010
Cluster HCCA: Cluster_42

Target Alias Description ECC score Gene Family Method Actions
Adi_g002735 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g005707 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g014779 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g069256 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g32925 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g23401 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Azfi_s1396.g102567 No alias not classified & original description: CDS=1-1371 0.05 OrthoFinder output from all 47 species
Cba_g20476 MEF22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g21995 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g73866 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.09G023600.1 Ceric.09G023600 not classified & original description: pacid=50587368... 0.04 OrthoFinder output from all 47 species
Ceric.22G009800.1 Ceric.22G009800 not classified & original description: pacid=50615356... 0.04 OrthoFinder output from all 47 species
Ceric.22G034400.1 Ceric.22G034400 not classified & original description: pacid=50613809... 0.03 OrthoFinder output from all 47 species
Ceric.23G030200.1 Ceric.23G030200 not classified & original description: pacid=50609682... 0.03 OrthoFinder output from all 47 species
Ceric.33G026100.1 Ceric.33G026100 not classified & original description: pacid=50606682... 0.04 OrthoFinder output from all 47 species
Dde_g26933 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Gb_02037 CRR22 Pentatricopeptide repeat-containing protein DOT4,... 0.05 OrthoFinder output from all 47 species
Gb_02998 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.05 OrthoFinder output from all 47 species
Gb_04077 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.06 OrthoFinder output from all 47 species
Gb_06523 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.05 OrthoFinder output from all 47 species
Gb_08036 EMB2261 Pentatricopeptide repeat-containing protein At2g27610... 0.08 OrthoFinder output from all 47 species
Gb_10615 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.07 OrthoFinder output from all 47 species
Gb_11039 VAC1, ECB2, ATECB2 RNA editing factor (CRR21) 0.05 OrthoFinder output from all 47 species
Gb_11222 No alias Putative pentatricopeptide repeat-containing protein... 0.09 OrthoFinder output from all 47 species
Gb_11667 CRR22 Pentatricopeptide repeat-containing protein At3g03580... 0.08 OrthoFinder output from all 47 species
Gb_12240 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.04 OrthoFinder output from all 47 species
Gb_15666 No alias Putative pentatricopeptide repeat-containing protein... 0.05 OrthoFinder output from all 47 species
Gb_17177 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.07 OrthoFinder output from all 47 species
Gb_18263 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.05 OrthoFinder output from all 47 species
Gb_18914 CRR2 Pentatricopeptide repeat-containing protein At3g57430,... 0.08 OrthoFinder output from all 47 species
Gb_21580 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.05 OrthoFinder output from all 47 species
Gb_23018 REME1 RNA editing factor (OTP82) 0.05 OrthoFinder output from all 47 species
Gb_23267 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.04 OrthoFinder output from all 47 species
Gb_23967 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.04 OrthoFinder output from all 47 species
Gb_25604 No alias Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
Gb_26581 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.06 OrthoFinder output from all 47 species
Gb_27880 DOT4 RNA editing factor (ECB2/VAC1) 0.05 OrthoFinder output from all 47 species
Gb_29466 CRR22 Pentatricopeptide repeat-containing protein At2g22070... 0.07 OrthoFinder output from all 47 species
Gb_30190 No alias Pentatricopeptide repeat-containing protein At1g18485... 0.04 OrthoFinder output from all 47 species
Gb_31111 EMB2758 Pentatricopeptide repeat-containing protein At2g22070... 0.04 OrthoFinder output from all 47 species
Gb_33411 EMB2261 Pentatricopeptide repeat-containing protein At2g27610... 0.06 OrthoFinder output from all 47 species
Gb_33537 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.05 OrthoFinder output from all 47 species
Gb_35599 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.04 OrthoFinder output from all 47 species
Gb_36806 EMB2261 Pentatricopeptide repeat-containing protein At2g27610... 0.04 OrthoFinder output from all 47 species
Gb_37176 CRR22 Pentatricopeptide repeat-containing protein At2g22070... 0.04 OrthoFinder output from all 47 species
Gb_38301 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.06 OrthoFinder output from all 47 species
Len_g56988 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07044 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g33253 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_34492g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.03 OrthoFinder output from all 47 species
Msp_g20955 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g21360 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g28787 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g39221 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g41114 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g41122 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g05844 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g63120 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g09327 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0095.g019261 No alias not classified & original description: CDS=1-3048 0.03 OrthoFinder output from all 47 species
Sam_g26608 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc06g068810.4.1 Solyc06g068810 Pentatricopeptide repeat-containing protein At5g50990... 0.03 OrthoFinder output from all 47 species
Solyc09g009790.4.1 Solyc09g009790 Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
Spa_g23933 REME1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g54647 CRR2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g44089 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e008183_P001 Zm00001e008183 Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
Zm00001e031693_P001 Zm00001e031693 Pentatricopeptide repeat-containing protein At4g14050,... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 664 710
IPR002885 Pentatricopeptide_repeat 327 374
IPR002885 Pentatricopeptide_repeat 225 273
IPR002885 Pentatricopeptide_repeat 563 611
IPR002885 Pentatricopeptide_repeat 125 171
IPR002885 Pentatricopeptide_repeat 402 428
IPR002885 Pentatricopeptide_repeat 506 530
IPR002885 Pentatricopeptide_repeat 534 562
IPR032867 DYW_dom 837 961
No external refs found!