Aliases : LOP1, TRN1
Description : Protein TORNADO 1 OS=Arabidopsis thaliana (sp|q9fj57|trn1_arath : 437.0)
Gene families : OG0000350 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000350_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00055p00138540 | LOP1, TRN1,... | Protein TORNADO 1 OS=Arabidopsis thaliana | 0.03 | OrthoFinder output from all 47 species | |
| Aop_g09896 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aop_g24699 | LOP1, TRN1 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Azfi_s0049.g030702 | LOP1, TRN1 | not classified & original description: CDS=40-3219 | 0.02 | OrthoFinder output from all 47 species | |
| Azfi_s0049.g030849 | No alias | not classified & original description: CDS=1-2208 | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g36996 | LOP1, TRN1 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ceric.18G016000.1 | Ceric.18G016000 | not classified & original description: pacid=50622446... | 0.02 | OrthoFinder output from all 47 species | |
| Ceric.18G016400.1 | Ceric.18G016400 | not classified & original description: pacid=50620952... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.20G043500.1 | LOP1, TRN1,... | not classified & original description: pacid=50566189... | 0.02 | OrthoFinder output from all 47 species | |
| Dac_g21708 | LOP1, TRN1 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Dac_g28623 | LOP1, TRN1 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dac_g36702 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dde_g12718 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dde_g16004 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Dde_g17501 | LOP1, TRN1 | not classified & original description: none | 0.01 | OrthoFinder output from all 47 species | |
| Dde_g26452 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| GSVIVT01037769001 | LOP1, TRN1 | Protein TORNADO 1 OS=Arabidopsis thaliana | 0.03 | OrthoFinder output from all 47 species | |
| Gb_41768 | LOP1, TRN1 | Protein TORNADO 1 OS=Arabidopsis thaliana... | 0.04 | OrthoFinder output from all 47 species | |
| Lfl_g10860 | LOP1, TRN1 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Msp_g15715 | LOP1, TRN1 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Msp_g24007 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Nbi_g37529 | LOP1, TRN1 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Pir_g06746 | LOP1, TRN1 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Pir_g07082 | LOP1, TRN1 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pir_g18657 | LOP1, TRN1 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ppi_g42088 | LOP1, TRN1 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Solyc03g112750.4.1 | LOP1, TRN1,... | Protein TORNADO 1 OS=Arabidopsis thaliana... | 0.03 | OrthoFinder output from all 47 species | |
| Tin_g45781 | LOP1, TRN1 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000976 | transcription cis-regulatory region binding | IEP | HCCA |
| MF | GO:0000977 | RNA polymerase II transcription regulatory region sequence-specific DNA binding | IEP | HCCA |
| MF | GO:0001067 | transcription regulatory region nucleic acid binding | IEP | HCCA |
| MF | GO:0003674 | molecular_function | IEP | HCCA |
| MF | GO:0003690 | double-stranded DNA binding | IEP | HCCA |
| MF | GO:0003824 | catalytic activity | IEP | HCCA |
| MF | GO:0004252 | serine-type endopeptidase activity | IEP | HCCA |
| MF | GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds | IEP | HCCA |
| MF | GO:0004650 | polygalacturonase activity | IEP | HCCA |
| MF | GO:0004668 | protein-arginine deiminase activity | IEP | HCCA |
| BP | GO:0005975 | carbohydrate metabolic process | IEP | HCCA |
| BP | GO:0006576 | biogenic amine metabolic process | IEP | HCCA |
| BP | GO:0006595 | polyamine metabolic process | IEP | HCCA |
| BP | GO:0006596 | polyamine biosynthetic process | IEP | HCCA |
| BP | GO:0008150 | biological_process | IEP | HCCA |
| BP | GO:0008152 | metabolic process | IEP | HCCA |
| MF | GO:0008238 | exopeptidase activity | IEP | HCCA |
| BP | GO:0009308 | amine metabolic process | IEP | HCCA |
| BP | GO:0009309 | amine biosynthetic process | IEP | HCCA |
| BP | GO:0009445 | putrescine metabolic process | IEP | HCCA |
| BP | GO:0009446 | putrescine biosynthetic process | IEP | HCCA |
| MF | GO:0016787 | hydrolase activity | IEP | HCCA |
| MF | GO:0016798 | hydrolase activity, acting on glycosyl bonds | IEP | HCCA |
| MF | GO:0016810 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds | IEP | HCCA |
| MF | GO:0016813 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines | IEP | HCCA |
| MF | GO:0020037 | heme binding | IEP | HCCA |
| MF | GO:0030247 | polysaccharide binding | IEP | HCCA |
| MF | GO:0032422 | purine-rich negative regulatory element binding | IEP | HCCA |
| BP | GO:0042401 | biogenic amine biosynthetic process | IEP | HCCA |
| MF | GO:0043565 | sequence-specific DNA binding | IEP | HCCA |
| MF | GO:0046906 | tetrapyrrole binding | IEP | HCCA |
| MF | GO:0070008 | serine-type exopeptidase activity | IEP | HCCA |
| BP | GO:0071704 | organic substance metabolic process | IEP | HCCA |
| MF | GO:1990837 | sequence-specific double-stranded DNA binding | IEP | HCCA |
No InterPro domains available for this sequence
| No external refs found! |
