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  5. MA_953240g0010

MA_953240g0010


Description : Pentatricopeptide repeat-containing protein At4g33170 OS=Arabidopsis thaliana (sp|q9smz2|pp347_arath : 610.0)


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_953240g0010
Cluster HCCA: Cluster_42

Target Alias Description ECC score Gene Family Method Actions
AT1G09410 No alias pentatricopeptide (PPR) repeat-containing protein 0.02 OrthoFinder output from all 47 species
AT4G37170 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
AT5G39680 EMB2744 Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
AT5G40410 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g005790 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g036547 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g043352 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g099248 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g13994 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g16959 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g05980 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01010647001 SLO1 Pentatricopeptide repeat-containing protein At2g22410,... 0.03 OrthoFinder output from all 47 species
GSVIVT01019408001 No alias Pentatricopeptide repeat-containing protein At4g21300... 0.03 OrthoFinder output from all 47 species
GSVIVT01037377001 OTP82 Pentatricopeptide repeat-containing protein At1g08070,... 0.03 OrthoFinder output from all 47 species
Gb_02031 CRR22 RNA editing factor (MEF19) 0.04 OrthoFinder output from all 47 species
Gb_02065 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species
Gb_02544 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 OrthoFinder output from all 47 species
Gb_02613 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 OrthoFinder output from all 47 species
Gb_03474 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species
Gb_04385 No alias RNA editing factor (CRR21) 0.04 OrthoFinder output from all 47 species
Gb_04611 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.03 OrthoFinder output from all 47 species
Gb_04648 REME1 RNA editing factor (OTP82) 0.03 OrthoFinder output from all 47 species
Gb_04785 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 OrthoFinder output from all 47 species
Gb_04844 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species
Gb_05127 No alias Pentatricopeptide repeat-containing protein At3g26540... 0.05 OrthoFinder output from all 47 species
Gb_05939 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
Gb_08569 OTP84 RNA editing factor (OTP82) 0.03 OrthoFinder output from all 47 species
Gb_08619 No alias RNA editing factor (MEF19) 0.03 OrthoFinder output from all 47 species
Gb_08745 CRR22 RNA editing factor (OTP82) 0.04 OrthoFinder output from all 47 species
Gb_09654 No alias RNA editing factor (MEF13) 0.04 OrthoFinder output from all 47 species
Gb_10133 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 OrthoFinder output from all 47 species
Gb_10726 No alias Putative pentatricopeptide repeat-containing protein... 0.05 OrthoFinder output from all 47 species
Gb_10903 No alias Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
Gb_10908 No alias Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
Gb_11925 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 OrthoFinder output from all 47 species
Gb_12240 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.03 OrthoFinder output from all 47 species
Gb_15476 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 OrthoFinder output from all 47 species
Gb_15506 CRR22 RNA editing factor (OTP82) 0.03 OrthoFinder output from all 47 species
Gb_16017 CRR22 RNA editing factor (MEF19) 0.05 OrthoFinder output from all 47 species
Gb_16070 CRR22 Pentatricopeptide repeat-containing protein At2g27610... 0.02 OrthoFinder output from all 47 species
Gb_16288 CRR22 RNA editing factor (OTP82) 0.05 OrthoFinder output from all 47 species
Gb_16848 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species
Gb_17095 No alias Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
Gb_18359 CRR22 Pentatricopeptide repeat-containing protein At3g12770... 0.04 OrthoFinder output from all 47 species
Gb_19828 No alias RNA editing factor (OTP82) 0.02 OrthoFinder output from all 47 species
Gb_19924 OTP84 Pentatricopeptide repeat-containing protein At3g57430,... 0.04 OrthoFinder output from all 47 species
Gb_20837 OTP84 Pentatricopeptide repeat-containing protein At2g22070... 0.04 OrthoFinder output from all 47 species
Gb_21054 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
Gb_21237 REME1 Putative pentatricopeptide repeat-containing protein... 0.06 OrthoFinder output from all 47 species
Gb_22769 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 OrthoFinder output from all 47 species
Gb_23605 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.03 OrthoFinder output from all 47 species
Gb_23934 OTP84 Pentatricopeptide repeat-containing protein At3g12770... 0.03 OrthoFinder output from all 47 species
Gb_24633 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
Gb_24816 No alias Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
Gb_25283 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species
Gb_26158 CRR22 RNA editing factor (OTP82) 0.03 OrthoFinder output from all 47 species
Gb_26861 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
Gb_28030 No alias Pentatricopeptide repeat-containing protein At1g08070,... 0.05 OrthoFinder output from all 47 species
Gb_28279 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
Gb_28288 CRR22 Pentatricopeptide repeat-containing protein At2g27610... 0.02 OrthoFinder output from all 47 species
Gb_28612 LOI1, MEF11 RNA editing factor (MEF11) 0.04 OrthoFinder output from all 47 species
Gb_28765 REME1 Pentatricopeptide repeat-containing protein At4g02750... 0.04 OrthoFinder output from all 47 species
Gb_28780 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species
Gb_31794 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.05 OrthoFinder output from all 47 species
Gb_32451 CRR22 Pentatricopeptide repeat-containing protein At3g63370,... 0.04 OrthoFinder output from all 47 species
Gb_32455 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.05 OrthoFinder output from all 47 species
Gb_32456 CRR22 Pentatricopeptide repeat-containing protein At4g02750... 0.04 OrthoFinder output from all 47 species
Gb_32528 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.04 OrthoFinder output from all 47 species
Gb_32965 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 OrthoFinder output from all 47 species
Gb_33117 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.03 OrthoFinder output from all 47 species
Gb_33135 CRR22 Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
Gb_33726 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species
Gb_35395 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
Gb_35396 No alias Pentatricopeptide repeat-containing protein At4g39530... 0.03 OrthoFinder output from all 47 species
Gb_35793 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 OrthoFinder output from all 47 species
Gb_37102 OTP84 RNA editing factor (MEF19) 0.04 OrthoFinder output from all 47 species
Gb_37624 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.07 OrthoFinder output from all 47 species
Gb_37802 No alias Pentatricopeptide repeat-containing protein At2g33680... 0.03 OrthoFinder output from all 47 species
Gb_38249 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species
Gb_38441 OTP84 Pentatricopeptide repeat-containing protein At3g57430,... 0.03 OrthoFinder output from all 47 species
Gb_38503 CRR22 Pentatricopeptide repeat-containing protein At4g02750... 0.04 OrthoFinder output from all 47 species
Gb_39300 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.03 OrthoFinder output from all 47 species
Gb_40303 No alias Pentatricopeptide repeat-containing protein At3g24000,... 0.04 OrthoFinder output from all 47 species
Gb_40472 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.04 OrthoFinder output from all 47 species
Gb_40680 CRR22 Pentatricopeptide repeat-containing protein At2g22070... 0.05 OrthoFinder output from all 47 species
Gb_41233 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
LOC_Os07g47370.1 LOC_Os07g47370 Pentatricopeptide repeat-containing protein At4g32430,... 0.02 OrthoFinder output from all 47 species
LOC_Os08g06490.2 SLO1, LOC_Os08g06490 Pentatricopeptide repeat-containing protein At4g22760... 0.02 OrthoFinder output from all 47 species
LOC_Os08g39130.1 LOC_Os08g39130 Pentatricopeptide repeat-containing protein At2g29760,... 0.03 OrthoFinder output from all 47 species
Len_g04829 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_107723g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
MA_109016g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 OrthoFinder output from all 47 species
MA_109016g0020 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species
MA_23144g0010 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.03 OrthoFinder output from all 47 species
MA_43497g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species
MA_59599g0010 EMB2261 Pentatricopeptide repeat-containing protein At2g27610... 0.03 OrthoFinder output from all 47 species
MA_72442g0020 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.03 OrthoFinder output from all 47 species
Msp_g45870 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g48473 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g41731 OTP82 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc12g042400.1.1 SLO1, Solyc12g042400 Pentatricopeptide repeat-containing protein At2g29760,... 0.03 OrthoFinder output from all 47 species
Spa_g50800 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e003562_P001 REME1, Zm00001e003562 Pentatricopeptide repeat-containing protein At2g03880,... 0.02 OrthoFinder output from all 47 species
Zm00001e038919_P001 Zm00001e038919 Pentatricopeptide repeat-containing protein At5g15300... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 300 347
IPR002885 Pentatricopeptide_repeat 199 245
IPR002885 Pentatricopeptide_repeat 401 448
IPR002885 Pentatricopeptide_repeat 98 145
IPR032867 DYW_dom 574 698
IPR002885 Pentatricopeptide_repeat 70 97
No external refs found!