LOC_Os01g02110.1 (RHD6, LOC_Os01g02110)


Aliases : RHD6, LOC_Os01g02110

Description : transcription factor (bHLH)


Gene families : OG0000019 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g02110.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00013p00245920 evm_27.TU.AmTr_v1... External stimuli response.light.UV-A/blue... 0.03 OrthoFinder output from all 47 species
AMTR_s00022p00228970 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.bHLH... 0.04 OrthoFinder output from all 47 species
AMTR_s00024p00250370 RHD6,... RNA biosynthesis.transcriptional activation.bHLH... 0.05 OrthoFinder output from all 47 species
AMTR_s00079p00137860 BEE3,... External stimuli response.light.UV-A/blue... 0.03 OrthoFinder output from all 47 species
AT1G18400 BEE1 BR enhanced expression 1 0.03 OrthoFinder output from all 47 species
AT1G27740 RSL4 root hair defective 6-like 4 0.04 OrthoFinder output from all 47 species
AT1G59640 BPEp, ZCW32, BPE, BPEub BIG PETAL P 0.03 OrthoFinder output from all 47 species
AT1G66470 RHD6 ROOT HAIR DEFECTIVE6 0.05 OrthoFinder output from all 47 species
AT1G73830 BEE3 BR enhanced expression 3 0.03 OrthoFinder output from all 47 species
AT2G46970 PIL1 phytochrome interacting factor 3-like 1 0.03 OrthoFinder output from all 47 species
AT3G50330 HEC2 basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.05 OrthoFinder output from all 47 species
AT4G28790 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.05 OrthoFinder output from all 47 species
AT4G28800 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.05 OrthoFinder output from all 47 species
AT4G33880 RSL2 ROOT HAIR DEFECTIVE 6-LIKE 2 0.04 OrthoFinder output from all 47 species
AT4G34530 CIB1 cryptochrome-interacting basic-helix-loop-helix 1 0.03 OrthoFinder output from all 47 species
AT5G37800 ATRSL1, RSL1 RHD SIX-LIKE 1 0.05 OrthoFinder output from all 47 species
AT5G48560 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.03 OrthoFinder output from all 47 species
AT5G58010 LRL3 LJRHL1-like 3 0.05 OrthoFinder output from all 47 species
AT5G67060 HEC1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g041743 LRL2 bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g085081 No alias regulatory protein (CIB) of blue light perception &... 0.02 OrthoFinder output from all 47 species
Adi_g088431 No alias regulatory protein (CIB) of blue light perception &... 0.02 OrthoFinder output from all 47 species
Aev_g01300 LRL3 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g03333 No alias regulatory protein (CIB) of blue light perception &... 0.03 OrthoFinder output from all 47 species
Aev_g17433 CIB1 regulatory protein (CIB) of blue light perception &... 0.02 OrthoFinder output from all 47 species
Aev_g39005 No alias regulatory protein (CIB) of blue light perception &... 0.02 OrthoFinder output from all 47 species
Ala_g18353 HEC1 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g21170 LRL3 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g26066 No alias regulatory protein (CIB) of blue light perception &... 0.02 OrthoFinder output from all 47 species
Ala_g26070 No alias bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g26607 RSL2 bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g39083 SPT bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Als_g01540 CIB1 regulatory protein (CIB) of blue light perception &... 0.04 OrthoFinder output from all 47 species
Als_g04401 SPT bHLH-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Als_g09007 CIB1 regulatory protein (CIB) of blue light perception &... 0.04 OrthoFinder output from all 47 species
Als_g22777 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g28177 No alias regulatory protein (CIB) of blue light perception &... 0.03 OrthoFinder output from all 47 species
Als_g32315 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g45376 RSL2 bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Als_g49595 LRL3 bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Als_g50098 LRL3 bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Als_g50421 No alias regulatory protein (CIB) of blue light perception &... 0.03 OrthoFinder output from all 47 species
Aob_g31617 No alias regulatory protein (CIB) of blue light perception &... 0.04 OrthoFinder output from all 47 species
Aob_g32490 RSL2 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g09856 CIB1 regulatory protein (CIB) of blue light perception &... 0.02 OrthoFinder output from all 47 species
Aop_g56154 BPEp, ZCW32, BPE, BPEub regulatory protein (CIB) of blue light perception &... 0.02 OrthoFinder output from all 47 species
Aop_g60014 No alias bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g63732 No alias bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene04843.t2 LRL3, Aspi01Gene04843 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene32833.t1 RSL2, Aspi01Gene32833 bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene50516.t1 Aspi01Gene50516 bHLH-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Azfi_s0482.g073137 LRL3 bHLH-type transcription factor & original description: CDS=1-1173 0.02 OrthoFinder output from all 47 species
Cba_g15079 No alias regulatory protein (CIB) of blue light perception &... 0.03 OrthoFinder output from all 47 species
Cba_g15803 No alias regulatory protein (CIB) of blue light perception &... 0.02 OrthoFinder output from all 47 species
Cba_g25222 LRL3 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.04G038900.1 LRL3, Ceric.04G038900 bHLH-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.08G020500.1 RSL2, Ceric.08G020500 bHLH-type transcription factor & original description:... 0.04 OrthoFinder output from all 47 species
Ceric.13G024600.1 PIL5, PIF1,... bHLH-type transcription factor & original description:... 0.04 OrthoFinder output from all 47 species
Ceric.16G014000.1 RHD6, Ceric.16G014000 bHLH-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.1Z049600.1 Ceric.1Z049600 regulatory protein (CIB) of blue light perception &... 0.04 OrthoFinder output from all 47 species
Ceric.1Z051300.1 LRL3, Ceric.1Z051300 bHLH-type transcription factor & original description:... 0.02 OrthoFinder output from all 47 species
Ceric.26G029500.1 Ceric.26G029500 regulatory protein (CIB) of blue light perception &... 0.03 OrthoFinder output from all 47 species
Ceric.32G068300.1 Ceric.32G068300 regulatory protein (CIB) of blue light perception &... 0.02 OrthoFinder output from all 47 species
Dac_g09865 No alias regulatory protein (CIB) of blue light perception &... 0.04 OrthoFinder output from all 47 species
Dac_g23770 No alias regulatory protein (CIB) of blue light perception &... 0.03 OrthoFinder output from all 47 species
Dac_g32598 SPT bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g06330 CIB1 regulatory protein (CIB) of blue light perception &... 0.03 OrthoFinder output from all 47 species
Dcu_g51679 HEC2 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g02837 GT140, IND1, IND, EDA33 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g25483 LRL3 bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g05791 No alias regulatory protein (CIB) of blue light perception &... 0.04 OrthoFinder output from all 47 species
GSVIVT01008628001 No alias External stimuli response.light.UV-A/blue... 0.03 OrthoFinder output from all 47 species
GSVIVT01022120001 HEC1 RNA biosynthesis.transcriptional activation.bHLH... 0.03 OrthoFinder output from all 47 species
GSVIVT01030846001 RHD6 RNA biosynthesis.transcriptional activation.bHLH... 0.03 OrthoFinder output from all 47 species
Gb_05320 LRL3 transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
Gb_21260 No alias transcription factor (bHLH). transcriptional regulator (CIB) 0.06 OrthoFinder output from all 47 species
Gb_36369 BPEp, ZCW32, BPE, BPEub transcription factor (bHLH). transcriptional regulator (CIB) 0.04 OrthoFinder output from all 47 species
LOC_Os01g51140.1 LOC_Os01g51140 transcription factor (bHLH) 0.04 OrthoFinder output from all 47 species
LOC_Os01g68700.1 LOC_Os01g68700 transcription factor (bHLH). transcriptional regulator (CIB) 0.05 OrthoFinder output from all 47 species
LOC_Os03g10770.1 RSL2, LOC_Os03g10770 transcription factor (bHLH) 0.06 OrthoFinder output from all 47 species
LOC_Os03g42100.1 RSL2, LOC_Os03g42100 transcription factor (bHLH) 0.08 OrthoFinder output from all 47 species
LOC_Os11g25560.1 LOC_Os11g25560 transcription factor (bHLH). transcriptional regulator (CIB) 0.05 OrthoFinder output from all 47 species
LOC_Os11g41640.1 RSL4, LOC_Os11g41640 transcription factor (bHLH) 0.05 OrthoFinder output from all 47 species
LOC_Os12g39850.1 RSL4, LOC_Os12g39850 transcription factor (bHLH) 0.04 OrthoFinder output from all 47 species
Len_g13542 No alias regulatory protein (CIB) of blue light perception &... 0.04 OrthoFinder output from all 47 species
Len_g36064 CIB5 regulatory protein (CIB) of blue light perception &... 0.05 OrthoFinder output from all 47 species
Lfl_g20995 BPEp, ZCW32, BPE, BPEub regulatory protein (CIB) of blue light perception &... 0.03 OrthoFinder output from all 47 species
MA_100071g0010 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
MA_10344244g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_10435000g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_128707g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_158362g0010 CIB5 transcription factor (bHLH). transcriptional regulator (CIB) 0.05 OrthoFinder output from all 47 species
MA_158850g0010 LRL3 transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
MA_306658g0010 No alias transcription factor (bHLH) 0.04 OrthoFinder output from all 47 species
MA_78485g0010 RSL4 transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
MA_83500g0010 HEC1 transcription factor (bHLH) 0.05 OrthoFinder output from all 47 species
MA_88831g0010 No alias transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
MA_9115341g0010 No alias transcription factor (bHLH). transcriptional regulator (CIB) 0.02 OrthoFinder output from all 47 species
Mp3g23300.1 HEC3 transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
Mp6g21470.1 RSL2 transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
Msp_g05645 SPT bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g06098 LRL3 bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g06114 No alias regulatory protein (CIB) of blue light perception &... 0.02 OrthoFinder output from all 47 species
Msp_g09011 SPT bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g14891 BPEp, ZCW32, BPE, BPEub regulatory protein (CIB) of blue light perception &... 0.02 OrthoFinder output from all 47 species
Msp_g15071 SPT bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g18521 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g24041 No alias regulatory protein (CIB) of blue light perception &... 0.03 OrthoFinder output from all 47 species
Msp_g24682 LRL3 bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g26514 No alias bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g46877 RSL2 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g11730 No alias regulatory protein (CIB) of blue light perception &... 0.03 OrthoFinder output from all 47 species
Nbi_g12274 SPT bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g14316 PIF3, POC1, PAP3 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g25271 RSL2 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g38111 No alias regulatory protein (CIB) of blue light perception &... 0.03 OrthoFinder output from all 47 species
Pir_g60433 SPT bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g08374 LRL3 bHLH-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g33726 No alias bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pp3c16_21590V3.1 HEC2, Pp3c16_21590 ROOT HAIR DEFECTIVE 6-LIKE 2 0.01 OrthoFinder output from all 47 species
Pp3c17_17000V3.1 LRL1, Pp3c17_17000 LJRHL1-like 1 0.02 OrthoFinder output from all 47 species
Ppi_g28847 No alias regulatory protein (CIB) of blue light perception &... 0.02 OrthoFinder output from all 47 species
Ppi_g33350 LRL3 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g39212 RHD6 bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g62088 CIB1 regulatory protein (CIB) of blue light perception &... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0038.g011925 HEC2 bHLH-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0082.g018070 No alias regulatory protein (CIB) of blue light perception &... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0237.g026567 No alias regulatory protein (CIB) of blue light perception &... 0.02 OrthoFinder output from all 47 species
Smo402301 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.06 OrthoFinder output from all 47 species
Smo409967 ATRSL1, RSL1 RNA biosynthesis.transcriptional activation.bHLH... 0.05 OrthoFinder output from all 47 species
Smo413232 RHD6 RNA biosynthesis.transcriptional activation.bHLH... 0.04 OrthoFinder output from all 47 species
Smo425336 LRL1 RNA biosynthesis.transcriptional activation.bHLH... 0.02 OrthoFinder output from all 47 species
Smo444782 LRL2 RNA biosynthesis.transcriptional activation.bHLH... 0.03 OrthoFinder output from all 47 species
Solyc01g010130.4.1 Solyc01g010130 transcription factor (bHLH). transcriptional regulator (CIB) 0.04 OrthoFinder output from all 47 species
Solyc01g107140.3.1 Solyc01g107140 transcription factor (bHLH) 0.04 OrthoFinder output from all 47 species
Solyc02g062690.3.1 BEE2, Solyc02g062690 transcription factor (bHLH). transcriptional regulator (CIB) 0.02 OrthoFinder output from all 47 species
Solyc02g091440.2.1 RHD6, Solyc02g091440 transcription factor (bHLH) 0.07 OrthoFinder output from all 47 species
Solyc03g044460.1.1 HEC2, Solyc03g044460 transcription factor (bHLH) 0.05 OrthoFinder output from all 47 species
Solyc03g113560.4.1 Solyc03g113560 transcription factor (bHLH) 0.04 OrthoFinder output from all 47 species
Solyc03g119390.4.1 BEE3, Solyc03g119390 transcription factor (bHLH). transcriptional regulator (CIB) 0.02 OrthoFinder output from all 47 species
Solyc04g005130.3.1 Solyc04g005130 transcription factor (bHLH). transcriptional regulator (CIB) 0.05 OrthoFinder output from all 47 species
Solyc04g005220.3.1 Solyc04g005220 transcription factor (bHLH). transcriptional regulator (CIB) 0.04 OrthoFinder output from all 47 species
Solyc04g077960.1.1 RSL2, Solyc04g077960 transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
Solyc12g010170.2.1 LRL1, Solyc12g010170 transcription factor (bHLH) 0.05 OrthoFinder output from all 47 species
Solyc12g088380.1.1 RSL2, Solyc12g088380 transcription factor (bHLH) 0.04 OrthoFinder output from all 47 species
Solyc12g088790.3.1 HEC2, Solyc12g088790 transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
Solyc12g098620.2.1 Solyc12g098620 transcription factor (bHLH). transcriptional regulator (CIB) 0.05 OrthoFinder output from all 47 species
Spa_g03670 RSL2 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g06107 No alias bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g26616 LRL3 bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g33531 RHD6 bHLH-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g41645 RHD6 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g41791 LRL3 bHLH-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g50491 LRL3 bHLH-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g10179 No alias regulatory protein (CIB) of blue light perception &... 0.02 OrthoFinder output from all 47 species
Zm00001e009823_P002 LRL1, Zm00001e009823 transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
Zm00001e010060_P001 Zm00001e010060 transcription factor (bHLH) 0.04 OrthoFinder output from all 47 species
Zm00001e011084_P002 Zm00001e011084 transcription factor (bHLH). transcriptional regulator (CIB) 0.02 OrthoFinder output from all 47 species
Zm00001e011866_P002 UNE12, Zm00001e011866 transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
Zm00001e015045_P002 Zm00001e015045 transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
Zm00001e015610_P001 RHD6, Zm00001e015610 transcription factor (bHLH) 0.13 OrthoFinder output from all 47 species
Zm00001e025656_P001 RHD6, Zm00001e025656 transcription factor (bHLH) 0.1 OrthoFinder output from all 47 species
Zm00001e032950_P002 UNE12, Zm00001e032950 transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
Zm00001e034446_P001 CIB5, Zm00001e034446 transcription factor (bHLH). transcriptional regulator (CIB) 0.07 OrthoFinder output from all 47 species
Zm00001e035422_P001 RSL4, Zm00001e035422 transcription factor (bHLH) 0.05 OrthoFinder output from all 47 species
Zm00001e036318_P001 LRL1, Zm00001e036318 transcription factor (bHLH) 0.11 OrthoFinder output from all 47 species
Zm00001e037266_P001 Zm00001e037266 transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
Zm00001e038765_P001 Zm00001e038765 transcription factor (bHLH) 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0046983 protein dimerization activity IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR011598 bHLH_dom 212 255
No external refs found!