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  5. LOC_Os01g07480.2

LOC_Os01g07480.2 (LOB, LOC_Os01g07480)


Aliases : LOB, LOC_Os01g07480

Description : transcription factor (AS2/LOB)


Gene families : OG0000114 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000114_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g07480.2
Cluster HCCA: Cluster_132

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00241970 LBD27, SCP,... RNA biosynthesis.transcriptional activation.AS2/LOB... 0.03 OrthoFinder output from all 47 species
AMTR_s00076p00127530 LBD4,... RNA biosynthesis.transcriptional activation.AS2/LOB... 0.06 OrthoFinder output from all 47 species
AT1G31320 LBD4 LOB domain-containing protein 4 0.04 OrthoFinder output from all 47 species
AT2G28500 LBD11 LOB domain-containing protein 11 0.05 OrthoFinder output from all 47 species
AT2G30340 LBD13 LOB domain-containing protein 13 0.02 OrthoFinder output from all 47 species
AT2G31310 LBD14 LOB domain-containing protein 14 0.03 OrthoFinder output from all 47 species
AT2G45420 LBD18 LOB domain-containing protein 18 0.04 OrthoFinder output from all 47 species
Adi_g052431 LBD4 AS2/LOB-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g085261 LOB AS2/LOB-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g00680 AS2 AS2/LOB-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Aev_g16089 LOB AS2/LOB-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g05610 LBD15, ASL11 AS2/LOB-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g30115 LOB AS2/LOB-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene65362.t1 AS2, Aspi01Gene65362 AS2/LOB-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene66498.t1 LBD4, Aspi01Gene66498 AS2/LOB-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.01G082500.1 LOB, Ceric.01G082500 AS2/LOB-type transcription factor & original... 0.05 OrthoFinder output from all 47 species
Ceric.38G014600.1 LOB, Ceric.38G014600 AS2/LOB-type transcription factor & original... 0.02 OrthoFinder output from all 47 species
GSVIVT01007677001 LOB RNA biosynthesis.transcriptional activation.AS2/LOB... 0.04 OrthoFinder output from all 47 species
GSVIVT01016328001 LBD11 RNA biosynthesis.transcriptional activation.AS2/LOB... 0.03 OrthoFinder output from all 47 species
GSVIVT01016334001 LBD11 RNA biosynthesis.transcriptional activation.AS2/LOB... 0.03 OrthoFinder output from all 47 species
GSVIVT01016500001 LBD33 RNA biosynthesis.transcriptional activation.AS2/LOB... 0.03 OrthoFinder output from all 47 species
GSVIVT01024662001 LBD12, ASL5, PCK1 RNA biosynthesis.transcriptional activation.AS2/LOB... 0.02 OrthoFinder output from all 47 species
MA_66501g0010 LBD12, ASL5, PCK1 transcription factor (AS2/LOB) 0.04 OrthoFinder output from all 47 species
Mp7g17250.1 LBD15, ASL11 transcription factor (AS2/LOB) 0.02 OrthoFinder output from all 47 species
Msp_g28887 LOB AS2/LOB-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g44922 LBD20 AS2/LOB-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g00674 LBD15, ASL11 AS2/LOB-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g28878 LBD15, ASL11 AS2/LOB-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g09676 LBD20 AS2/LOB-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g60181 LBD15, ASL11 AS2/LOB-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0089.g018622 LBD15, ASL11 AS2/LOB-type transcription factor & original... 0.02 OrthoFinder output from all 47 species
Sam_g49995 No alias AS2/LOB-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Solyc01g044520.2.1 LBD11, Solyc01g044520 transcription factor (AS2/LOB) 0.03 OrthoFinder output from all 47 species
Solyc01g091400.3.1 LBD19, Solyc01g091400 transcription factor (AS2/LOB) 0.03 OrthoFinder output from all 47 species
Solyc02g067800.4.1 LBD25, Solyc02g067800 transcription factor (AS2/LOB) 0.03 OrthoFinder output from all 47 species
Solyc06g050430.3.1 LBD15, ASL11,... transcription factor (AS2/LOB) 0.03 OrthoFinder output from all 47 species
Solyc11g072470.3.1 LBD1, Solyc11g072470 transcription factor (AS2/LOB) 0.03 OrthoFinder output from all 47 species
Solyc12g010810.1.1 LBD2, Solyc12g010810 transcription factor (AS2/LOB) 0.02 OrthoFinder output from all 47 species
Tin_g03878 LOB AS2/LOB-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g05369 LBD4 AS2/LOB-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e001031_P001 LBD18, Zm00001e001031 transcription factor (AS2/LOB) 0.03 OrthoFinder output from all 47 species
Zm00001e016785_P005 LOB, Zm00001e016785 transcription factor (AS2/LOB) 0.05 OrthoFinder output from all 47 species
Zm00001e019004_P002 AS2, Zm00001e019004 transcription factor (AS2/LOB) 0.03 OrthoFinder output from all 47 species
Zm00001e028582_P007 AS2, Zm00001e028582 transcription factor (AS2/LOB) 0.05 OrthoFinder output from all 47 species
Zm00001e038582_P001 LBD18, Zm00001e038582 transcription factor (AS2/LOB) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR004883 LOB 30 127
No external refs found!