1. Home
  2. Species
  3. Oryza sativa
  4. Sequence
  5. LOC_Os01g11550.1

LOC_Os01g11550.1 (TCP4, MEE35, LOC_Os01g11550)


Aliases : TCP4, MEE35, LOC_Os01g11550

Description : transcription factor (TCP)


Gene families : OG0000529 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000529_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g11550.1
Cluster HCCA: Cluster_46

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00021p00158020 TCP4, MEE35,... RNA biosynthesis.transcriptional activation.TCP... 0.04 OrthoFinder output from all 47 species
AT1G30210 ATTCP24, TCP24 TEOSINTE BRANCHED 1, cycloidea, and PCF family 24 0.06 OrthoFinder output from all 47 species
AT1G68800 TCP12, BRC2 TCP domain protein 12 0.05 OrthoFinder output from all 47 species
AT3G18550 BRC1, ATTCP18, TCP18 TCP family transcription factor 0.04 OrthoFinder output from all 47 species
AT4G18390 TCP2 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 0.04 OrthoFinder output from all 47 species
Aev_g07745 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g30836 TCP10 TCP-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g03629 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene55158.t1 TCP5, Aspi01Gene55158 TCP-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene64947.t1 TCP3, Aspi01Gene64947 TCP-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0010.g012107 ATTCP24, TCP24 TCP-type transcription factor & original description: CDS=1-672 0.02 OrthoFinder output from all 47 species
Azfi_s0538.g076302 TCP3 TCP-type transcription factor & original description: CDS=1-1575 0.03 OrthoFinder output from all 47 species
Dac_g28469 TCP3 TCP-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g07001 TCP3 TCP-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g07892 TCP3 TCP-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01008109001 TCP5 RNA biosynthesis.transcriptional activation.TCP... 0.03 OrthoFinder output from all 47 species
GSVIVT01011962001 TCP12, BRC2 RNA biosynthesis.transcriptional activation.TCP... 0.07 OrthoFinder output from all 47 species
GSVIVT01014236001 No alias RNA biosynthesis.transcriptional activation.TCP... 0.02 OrthoFinder output from all 47 species
GSVIVT01021167001 TCP3 RNA biosynthesis.transcriptional activation.TCP... 0.05 OrthoFinder output from all 47 species
GSVIVT01021528001 ATTCP24, TCP24 RNA biosynthesis.transcriptional activation.TCP... 0.03 OrthoFinder output from all 47 species
LOC_Os01g55750.1 TCP5, LOC_Os01g55750 transcription factor (TCP) 0.03 OrthoFinder output from all 47 species
LOC_Os03g57190.1 ATTCP24, TCP24,... transcription factor (TCP) 0.04 OrthoFinder output from all 47 species
LOC_Os07g05720.1 TCP2, LOC_Os07g05720 transcription factor (TCP) 0.03 OrthoFinder output from all 47 species
Lfl_g07001 TCP10 TCP-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
MA_101752g0020 ATTCP24, TCP24 transcription factor (TCP) 0.02 OrthoFinder output from all 47 species
MA_189502g0010 ATTCP24, TCP24 transcription factor (TCP) 0.04 OrthoFinder output from all 47 species
Msp_g20112 TCP2 TCP-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g05160 TCP3 TCP-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g27318 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g25790 TCP2 TCP-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g26630 TCP2 TCP-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Solyc03g119770.4.1 TCP12, BRC2,... transcription factor (TCP) 0.03 OrthoFinder output from all 47 species
Solyc05g009900.3.1 TCP12, BRC2,... transcription factor (TCP) 0.03 OrthoFinder output from all 47 species
Solyc07g062680.3.1 TCP4, MEE35,... transcription factor (TCP) 0.03 OrthoFinder output from all 47 species
Solyc10g008780.1.1 TCP10, Solyc10g008780 transcription factor (TCP) 0.06 OrthoFinder output from all 47 species
Zm00001e005909_P001 TCP2, Zm00001e005909 transcription factor (TCP) 0.07 OrthoFinder output from all 47 species
Zm00001e011516_P001 TCP2, Zm00001e011516 transcription factor (TCP) 0.04 OrthoFinder output from all 47 species
Zm00001e011911_P001 ATTCP24, TCP24,... transcription factor (TCP) 0.09 OrthoFinder output from all 47 species
Zm00001e019734_P001 TCP5, Zm00001e019734 transcription factor (TCP) 0.03 OrthoFinder output from all 47 species
Zm00001e032122_P001 TCP5, Zm00001e032122 transcription factor (TCP) 0.04 OrthoFinder output from all 47 species
Zm00001e032821_P001 TCP2, Zm00001e032821 transcription factor (TCP) 0.12 OrthoFinder output from all 47 species
Zm00001e035648_P002 ATTCP24, TCP24,... transcription factor (TCP) 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003887 DNA-directed DNA polymerase activity IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
CC GO:0018995 host cellular component IEP HCCA
CC GO:0033643 host cell part IEP HCCA
CC GO:0033646 host intracellular part IEP HCCA
CC GO:0033647 host intracellular organelle IEP HCCA
CC GO:0033648 host intracellular membrane-bounded organelle IEP HCCA
MF GO:0034061 DNA polymerase activity IEP HCCA
CC GO:0042025 host cell nucleus IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
InterPro domains Description Start Stop
IPR017887 TF_TCP_subgr 87 152
No external refs found!