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  5. LOC_Os01g11952.1

LOC_Os01g11952.1 (SET29, SDG29, ATX5,...)


Aliases : SET29, SDG29, ATX5, LOC_Os01g11952

Description : class III/Trithorax histone methyltransferase component of histone lysine methylation/demethylation


Gene families : OG0000660 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000660_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g11952.1
Cluster HCCA: Cluster_61

Target Alias Description ECC score Gene Family Method Actions
AT5G53430 SET29, SDG29, ATX5 SET domain group 29 0.03 OrthoFinder output from all 47 species
Aev_g20401 ATX4, SDG16 class-III histone methyltransferase *(Trx) & original... 0.03 OrthoFinder output from all 47 species
Als_g56618 ATX4, SDG16 class-III histone methyltransferase *(Trx) & original... 0.02 OrthoFinder output from all 47 species
Aop_g19017 ATX3, SDG14 class-III histone methyltransferase *(Trx) & original... 0.02 OrthoFinder output from all 47 species
Aop_g69984 SDG25, ATXR7 class-III histone methyltransferase *(Trx) & original... 0.04 OrthoFinder output from all 47 species
Aspi01Gene46553.t2 ATX4, SDG16,... class-III histone methyltransferase *(Trx) & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene46554.t1 ATX4, SDG16,... class-III histone methyltransferase *(Trx) & original... 0.04 OrthoFinder output from all 47 species
Aspi01Gene46555.t1 SET29, SDG29,... N-methyltransferase component *(ATX3/4/5) of COMPASS... 0.03 OrthoFinder output from all 47 species
Aspi01Gene65361.t1 SDG25, ATXR7,... class-III histone methyltransferase *(Trx) & original... 0.02 OrthoFinder output from all 47 species
Ceric.01G107400.1 ATX4, SDG16,... class-III histone methyltransferase *(Trx) & original... 0.03 OrthoFinder output from all 47 species
Cre09.g395584 No alias No description available 0.02 OrthoFinder output from all 47 species
Dcu_g07171 SDG25, ATXR7 class-III histone methyltransferase *(Trx) & original... 0.02 OrthoFinder output from all 47 species
GSVIVT01038708001 ATX4, SDG16 Chromatin organisation.histone modifications.histone... 0.03 OrthoFinder output from all 47 species
Ore_g05016 SET29, SDG29, ATX5 class-III histone methyltransferase *(Trx) & original... 0.02 OrthoFinder output from all 47 species
Sam_g14051 No alias class-III histone methyltransferase *(Trx) & original... 0.02 OrthoFinder output from all 47 species
Zm00001e039307_P005 SDG25, ATXR7,... class III/Trithorax histone methyltransferase component... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005096 GTPase activator activity IEP HCCA
MF GO:0008047 enzyme activator activity IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0030234 enzyme regulator activity IEP HCCA
MF GO:0030695 GTPase regulator activity IEP HCCA
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
MF GO:0098772 molecular function regulator activity IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA
InterPro domains Description Start Stop
IPR001214 SET_dom 860 965
IPR000313 PWWP_dom 190 286
No external refs found!