LOC_Os01g13520.1 (ARF11, LOC_Os01g13520)

Aliases : ARF11, LOC_Os01g13520

Description : transcription factor (ARF)

Gene families : OG0000088 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000088_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os01g13520.1

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00155p00067370	ARF10,...	RNA biosynthesis.transcriptional activation.B3...	0.03	OrthoFinder output from all 47 species
AT1G59750	ARF1	auxin response factor 1	0.03	OrthoFinder output from all 47 species
AT5G37020	ARF8, ATARF8	auxin response factor 8	0.04	OrthoFinder output from all 47 species
Adi_g024483	ARF19, IAA22, ARF11	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g075709	ARF6	ARF-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Adi_g118366	ARF1	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aev_g20472	ARF6	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Als_g40259	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0038.g026103	ARF6	ARF-type transcription factor & original description:...	0.02	OrthoFinder output from all 47 species
Ehy_g30682	ARF10	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01021553001	ARF6	RNA biosynthesis.transcriptional activation.B3...	0.04	OrthoFinder output from all 47 species
LOC_Os05g43920.1	ARF3, ETT, LOC_Os05g43920	transcription factor (ARF)	0.06	OrthoFinder output from all 47 species
LOC_Os05g48870.1	ARF3, ETT, LOC_Os05g48870	transcription factor (ARF)	0.05	OrthoFinder output from all 47 species
LOC_Os10g33940.1	ARF16, LOC_Os10g33940	transcription factor (ARF)	0.04	OrthoFinder output from all 47 species
Ore_g15165	ARF6	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0004.g002378	ARF1	ARF-type transcription factor & original description:...	0.05	OrthoFinder output from all 47 species
Sacu_v1.1_s0032.g010740	TIR5, MSG1,...	ARF-type transcription factor & original description: CDS=1-2400	0.03	OrthoFinder output from all 47 species
Solyc01g096070.3.1	ARF9, Solyc01g096070	transcription factor (ARF)	0.09	OrthoFinder output from all 47 species
Solyc03g031970.4.1	ARF8, ATARF8,...	transcription factor (ARF)	0.04	OrthoFinder output from all 47 species
Spa_g51847	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Zm00001e015164_P002	ARF10, Zm00001e015164	transcription factor (ARF)	0.05	OrthoFinder output from all 47 species
Zm00001e023038_P001	ARF10, Zm00001e023038	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species
Zm00001e030325_P003	ARF6, Zm00001e030325	transcription factor (ARF)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	IEA	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR010525	ARF_dom	248	329
IPR033389	AUX/IAA_dom	581	631
IPR003340	B3_DNA-bd	122	222

External Links

No external refs found!

LOC_Os01g13520.1 (ARF11, LOC_Os01g13520)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation