LOC_Os01g15300.1 (LOC_Os01g15300)

Aliases : LOC_Os01g15300

Description : Zinc finger CCCH domain-containing protein 4 OS=Oryza sativa subsp. japonica (sp|q1eht7|c3h4_orysj : 2060.0)

Gene families : OG0006520 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006520_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os01g15300.1

Target	Alias	Description	ECC score	Gene Family Method
AT2G47680	No alias	zinc finger (CCCH type) helicase family protein	0.03	OrthoFinder output from all 47 species
Aop_g13670	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene59730.t1	Aspi01Gene59730	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Mp4g02260.1	No alias	DExH-box ATP-dependent RNA helicase DExH8 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Ore_g34566	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g22250	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e025569_P001	Zm00001e025569	Zinc finger CCCH domain-containing protein 4 OS=Oryza...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	IEA	Interproscan
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0016887	ATP hydrolysis activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001650	Helicase_C	255	379
IPR011545	DEAD/DEAH_box_helicase_dom	27	180
IPR000571	Znf_CCCH	753	776

External Links

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