1. Home
  2. Species
  3. Oryza sativa
  4. Sequence
  5. LOC_Os01g18400.1

LOC_Os01g18400.1 (LOC_Os01g18400)


Aliases : LOC_Os01g18400

Description : Chitinase 10 OS=Oryza sativa subsp. japonica (sp|q5nb11|chi10_orysj : 484.0)


Gene families : OG0000280 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000280_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g18400.1
Cluster HCCA: Cluster_48

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00243300 HCHIB, B-CHI,... Endochitinase A2 OS=Pisum sativum 0.05 OrthoFinder output from all 47 species
AMTR_s00001p00243570 HCHIB, B-CHI,... Basic 30 kDa endochitinase OS=Solanum lycopersicum 0.03 OrthoFinder output from all 47 species
AMTR_s00001p00243680 HCHIB, B-CHI,... Chitinase 3 OS=Oryza sativa subsp. japonica 0.05 OrthoFinder output from all 47 species
AMTR_s00001p00243780 HCHIB, B-CHI,... Endochitinase A2 OS=Pisum sativum 0.04 OrthoFinder output from all 47 species
AMTR_s00001p00244240 HCHIB, B-CHI,... Endochitinase B OS=Nicotiana tabacum 0.04 OrthoFinder output from all 47 species
AMTR_s00045p00134660 evm_27.TU.AmTr_v1... Chitinase 10 OS=Oryza sativa subsp. japonica 0.06 OrthoFinder output from all 47 species
AMTR_s00066p00199730 ATEP3, EP3,... Endochitinase EP3 OS=Arabidopsis thaliana 0.06 OrthoFinder output from all 47 species
AT1G02360 No alias Chitinase family protein 0.06 OrthoFinder output from all 47 species
AT2G43570 CHI chitinase, putative 0.04 OrthoFinder output from all 47 species
AT2G43580 No alias Chitinase family protein 0.05 OrthoFinder output from all 47 species
AT2G43590 No alias Chitinase family protein 0.04 OrthoFinder output from all 47 species
AT2G43620 No alias Chitinase family protein 0.04 OrthoFinder output from all 47 species
AT3G12500 HCHIB, B-CHI,... basic chitinase 0.05 OrthoFinder output from all 47 species
AT3G47540 No alias Chitinase family protein 0.05 OrthoFinder output from all 47 species
AT3G54420 ATEP3, EP3,... homolog of carrot EP3-3 chitinase 0.04 OrthoFinder output from all 47 species
Adi_g026236 HCHIB, B-CHI,... not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g36519 HCHIB, B-CHI,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g30545 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g35678 ATEP3, EP3,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene32076.t1 ATEP3, EP3,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene32079.t1 ATEP3, EP3,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene32081.t1 ATEP3, EP3,... not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene32082.t1 ATEP3, EP3,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene32105.t1 HCHIB, B-CHI,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene32107.t1 HCHIB, B-CHI,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene32111.t1 HCHIB, B-CHI,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene32113.t1 ATEP3, EP3,... not classified & original description: none 0.07 OrthoFinder output from all 47 species
Aspi01Gene32150.t1 HCHIB, B-CHI,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0001.g000740 No alias not classified & original description: CDS=1-501 0.04 OrthoFinder output from all 47 species
Azfi_s0001.g000741 ATEP3, EP3,... not classified & original description: CDS=226-924 0.06 OrthoFinder output from all 47 species
Azfi_s0001.g000746 ATEP3, EP3,... not classified & original description: CDS=491-1327 0.11 OrthoFinder output from all 47 species
Azfi_s0001.g000750 ATEP3, EP3,... not classified & original description: CDS=1-942 0.11 OrthoFinder output from all 47 species
Dac_g15215 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g25280 HCHIB, B-CHI,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g04424 HCHIB, B-CHI,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01007191001 No alias No description available 0.02 OrthoFinder output from all 47 species
GSVIVT01028243001 No alias Chitinase 10 OS=Oryza sativa subsp. japonica 0.05 OrthoFinder output from all 47 species
GSVIVT01038111001 ATEP3, EP3,... Endochitinase EP3 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
GSVIVT01038116001 ATEP3, EP3,... Endochitinase EP3 OS=Arabidopsis thaliana 0.08 OrthoFinder output from all 47 species
GSVIVT01038117001 ATEP3, EP3,... Endochitinase EP3 OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
GSVIVT01038120001 ATEP3, EP3,... Endochitinase EP3 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
GSVIVT01038126001 ATEP3, EP3,... Endochitinase EP3 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Gb_03375 No alias Chitinase 10 OS=Oryza sativa subsp. japonica... 0.06 OrthoFinder output from all 47 species
Gb_07464 No alias Chitinase 4 OS=Oryza sativa subsp. japonica... 0.02 OrthoFinder output from all 47 species
Gb_20764 No alias Chitinase 5 OS=Oryza sativa subsp. japonica... 0.03 OrthoFinder output from all 47 species
Gb_20766 No alias Chitinase 5 OS=Oryza sativa subsp. japonica... 0.04 OrthoFinder output from all 47 species
LOC_Os02g39330.1 ATEP3, EP3,... Chitinase 6 OS=Oryza sativa subsp. japonica... 0.03 OrthoFinder output from all 47 species
LOC_Os04g09390.1 LOC_Os04g09390 Lectin OS=Oryza sativa subsp. japonica... 0.03 OrthoFinder output from all 47 species
LOC_Os05g33130.1 HCHIB, B-CHI,... Chitinase 2 OS=Oryza sativa subsp. japonica... 0.03 OrthoFinder output from all 47 species
LOC_Os10g39680.1 HCHIB, B-CHI,... Chitinase 8 OS=Oryza sativa subsp. japonica... 0.04 OrthoFinder output from all 47 species
Len_g56980 HCHIB, B-CHI,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_102538g0010 No alias Endochitinase A OS=Zea mays (sp|p29022|chia_maize : 100.0) 0.03 OrthoFinder output from all 47 species
MA_10425967g0010 HCHIB, B-CHI,... Basic endochitinase OS=Vitis vinifera... 0.03 OrthoFinder output from all 47 species
MA_1327504g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_295712g0010 ATEP3, EP3,... Chitinase 5 OS=Oryza sativa subsp. japonica... 0.04 OrthoFinder output from all 47 species
MA_656046g0010 No alias Chitinase 6 OS=Oryza sativa subsp. japonica... 0.03 OrthoFinder output from all 47 species
MA_741127g0010 No alias Endochitinase At2g43610 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
MA_80085g0010 HCHIB, B-CHI,... Basic endochitinase C OS=Secale cereale... 0.05 OrthoFinder output from all 47 species
MA_8921185g0010 HCHIB, B-CHI,... Basic endochitinase C OS=Secale cereale... 0.04 OrthoFinder output from all 47 species
MA_8960362g0010 HCHIB, B-CHI,... Endochitinase 1 OS=Theobroma cacao (sp|q41596|chi1_thecc : 81.6) 0.06 OrthoFinder output from all 47 species
Mp2g24440.1 HCHIB, B-CHI,... Endochitinase CH25 OS=Brassica napus... 0.03 OrthoFinder output from all 47 species
Mp4g01780.1 HCHIB, B-CHI,... Endochitinase CH5B OS=Phaseolus vulgaris... 0.02 OrthoFinder output from all 47 species
Mp4g20450.1 HCHIB, B-CHI,... Endochitinase 1 OS=Theobroma cacao (sp|q41596|chi1_thecc : 229.0) 0.03 OrthoFinder output from all 47 species
Ore_g32598 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pp3c1_30410V3.1 Pp3c1_30410 chitinase, putative 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0023.g008764 ATEP3, EP3,... not classified & original description: CDS=1-579 0.03 OrthoFinder output from all 47 species
Sam_g00455 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g31038 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo426710 No alias Endochitinase A OS=Zea mays 0.03 OrthoFinder output from all 47 species
Solyc02g082920.4.1 HCHIB, B-CHI,... Acidic 26 kDa endochitinase OS=Solanum lycopersicum... 0.08 OrthoFinder output from all 47 species
Solyc02g082960.3.1 HCHIB, B-CHI,... Basic endochitinase (Fragment) OS=Solanum lycopersicum... 0.04 OrthoFinder output from all 47 species
Solyc07g009510.1.1 HEL, PR4, PR-4,... no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Solyc10g055800.2.1 HCHIB, B-CHI,... Basic 30 kDa endochitinase OS=Solanum lycopersicum... 0.06 OrthoFinder output from all 47 species
Solyc10g055820.3.1 HCHIB, B-CHI,... Basic 30 kDa endochitinase OS=Solanum lycopersicum... 0.03 OrthoFinder output from all 47 species
Spa_g08849 ATEP3, EP3,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e002252_P001 HCHIB, B-CHI,... Chitinase 8 OS=Oryza sativa subsp. japonica... 0.05 OrthoFinder output from all 47 species
Zm00001e015056_P001 ATEP3, EP3,... Chitinase 6 OS=Oryza sativa subsp. japonica... 0.02 OrthoFinder output from all 47 species
Zm00001e041138_P001 ATEP3, EP3,... Endochitinase B (Fragment) OS=Zea mays... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004568 chitinase activity IEA Interproscan
BP GO:0006032 chitin catabolic process IEA Interproscan
BP GO:0016998 cell wall macromolecule catabolic process IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0004857 enzyme inhibitor activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
MF GO:0009055 electron transfer activity IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
MF GO:0030234 enzyme regulator activity IEP HCCA
CC GO:0030312 external encapsulating structure IEP HCCA
CC GO:0031012 extracellular matrix IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0098772 molecular function regulator activity IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
MF GO:0140678 molecular function inhibitor activity IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR000726 Glyco_hydro_19_cat 52 284
No external refs found!