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  5. LOC_Os01g19960.1

LOC_Os01g19960.1 (LOC_Os01g19960)


Aliases : LOC_Os01g19960

Description : no hits & (original description: none)


Gene families : OG0000166 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000166_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g19960.1
Cluster HCCA: Cluster_1

Target Alias Description ECC score Gene Family Method Actions
ChrUn.fgenesh.mRNA.55 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
LOC_Os01g03590.1 LOC_Os01g03590 no hits & (original description: none) 0.08 OrthoFinder output from all 47 species
LOC_Os01g08730.1 LOC_Os01g08730 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
LOC_Os01g18550.1 LOC_Os01g18550 no hits & (original description: none) 0.15 OrthoFinder output from all 47 species
LOC_Os01g20190.1 LOC_Os01g20190 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
LOC_Os01g21480.1 LOC_Os01g21480 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
LOC_Os01g21490.1 LOC_Os01g21490 no hits & (original description: none) 0.09 OrthoFinder output from all 47 species
LOC_Os01g24530.1 LOC_Os01g24530 no hits & (original description: none) 0.09 OrthoFinder output from all 47 species
LOC_Os01g33630.1 LOC_Os01g33630 no hits & (original description: none) 0.1 OrthoFinder output from all 47 species
LOC_Os01g36766.1 LOC_Os01g36766 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
LOC_Os01g38810.1 LOC_Os01g38810 no hits & (original description: none) 0.08 OrthoFinder output from all 47 species
LOC_Os02g01420.1 LOC_Os02g01420 no hits & (original description: none) 0.09 OrthoFinder output from all 47 species
LOC_Os02g08280.1 LOC_Os02g08280 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
LOC_Os02g16120.1 LOC_Os02g16120 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
LOC_Os02g17110.1 LOC_Os02g17110 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
LOC_Os02g24310.1 LOC_Os02g24310 no hits & (original description: none) 0.09 OrthoFinder output from all 47 species
LOC_Os02g25370.1 LOC_Os02g25370 no hits & (original description: none) 0.19 OrthoFinder output from all 47 species
LOC_Os02g25520.1 LOC_Os02g25520 no hits & (original description: none) 0.11 OrthoFinder output from all 47 species
LOC_Os02g25560.1 LOC_Os02g25560 no hits & (original description: none) 0.07 OrthoFinder output from all 47 species
LOC_Os02g49290.1 LOC_Os02g49290 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
LOC_Os02g51230.1 LOC_Os02g51230 no hits & (original description: none) 0.09 OrthoFinder output from all 47 species
LOC_Os03g07680.1 LOC_Os03g07680 no hits & (original description: none) 0.09 OrthoFinder output from all 47 species
LOC_Os03g27520.1 LOC_Os03g27520 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
LOC_Os03g30080.1 LOC_Os03g30080 no hits & (original description: none) 0.07 OrthoFinder output from all 47 species
LOC_Os03g40500.1 LOC_Os03g40500 no hits & (original description: none) 0.07 OrthoFinder output from all 47 species
LOC_Os03g54020.1 LOC_Os03g54020 no hits & (original description: none) 0.17 OrthoFinder output from all 47 species
LOC_Os04g03710.1 LOC_Os04g03710 Subtilisin-like protease SBT3.10 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
LOC_Os04g06100.1 LOC_Os04g06100 no hits & (original description: none) 0.07 OrthoFinder output from all 47 species
LOC_Os04g19000.1 LOC_Os04g19000 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
LOC_Os04g20450.1 LOC_Os04g20450 no hits & (original description: none) 0.08 OrthoFinder output from all 47 species
LOC_Os04g22840.1 LOC_Os04g22840 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
LOC_Os04g23280.1 LOC_Os04g23280 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
LOC_Os04g25590.1 LOC_Os04g25590 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
LOC_Os04g26000.1 LOC_Os04g26000 no hits & (original description: none) 0.08 OrthoFinder output from all 47 species
LOC_Os04g29440.1 LOC_Os04g29440 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
LOC_Os04g29900.1 LOC_Os04g29900 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
LOC_Os04g34820.1 LOC_Os04g34820 no hits & (original description: none) 0.08 OrthoFinder output from all 47 species
LOC_Os04g40240.1 LOC_Os04g40240 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
LOC_Os04g43590.1 LOC_Os04g43590 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
LOC_Os05g03950.1 LOC_Os05g03950 no hits & (original description: none) 0.11 OrthoFinder output from all 47 species
LOC_Os05g10230.1 LOC_Os05g10230 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
LOC_Os05g14000.1 LOC_Os05g14000 no hits & (original description: none) 0.08 OrthoFinder output from all 47 species
LOC_Os05g16350.1 LOC_Os05g16350 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
LOC_Os05g16580.1 LOC_Os05g16580 no hits & (original description: none) 0.1 OrthoFinder output from all 47 species
LOC_Os05g18990.1 LOC_Os05g18990 no hits & (original description: none) 0.12 OrthoFinder output from all 47 species
LOC_Os05g26100.1 LOC_Os05g26100 no hits & (original description: none) 0.09 OrthoFinder output from all 47 species
LOC_Os05g27034.1 LOC_Os05g27034 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os05g27860.1 LOC_Os05g27860 no hits & (original description: none) 0.08 OrthoFinder output from all 47 species
LOC_Os05g39460.1 LOC_Os05g39460 no hits & (original description: none) 0.14 OrthoFinder output from all 47 species
LOC_Os05g39570.1 LOC_Os05g39570 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
LOC_Os05g50880.1 LOC_Os05g50880 no hits & (original description: none) 0.08 OrthoFinder output from all 47 species
LOC_Os06g10380.1 LOC_Os06g10380 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
LOC_Os06g15050.1 LOC_Os06g15050 no hits & (original description: none) 0.07 OrthoFinder output from all 47 species
LOC_Os06g15340.1 LOC_Os06g15340 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
LOC_Os06g15850.1 EIN4, LOC_Os06g15850 Ethylene receptor 4 OS=Oryza sativa subsp. japonica... 0.05 OrthoFinder output from all 47 species
LOC_Os06g16540.1 LOC_Os06g16540 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
LOC_Os06g16900.1 LOC_Os06g16900 no hits & (original description: none) 0.07 OrthoFinder output from all 47 species
LOC_Os06g19310.1 LOC_Os06g19310 no hits & (original description: none) 0.11 OrthoFinder output from all 47 species
LOC_Os06g21150.1 LOC_Os06g21150 no hits & (original description: none) 0.1 OrthoFinder output from all 47 species
LOC_Os06g27900.1 LOC_Os06g27900 no hits & (original description: none) 0.1 OrthoFinder output from all 47 species
LOC_Os06g30570.1 LOC_Os06g30570 no hits & (original description: none) 0.07 OrthoFinder output from all 47 species
LOC_Os06g33030.1 LOC_Os06g33030 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
LOC_Os06g35350.1 LOC_Os06g35350 no hits & (original description: none) 0.19 OrthoFinder output from all 47 species
LOC_Os06g42500.1 LOC_Os06g42500 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
LOC_Os06g42580.1 LOC_Os06g42580 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
LOC_Os06g42670.1 LOC_Os06g42670 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
LOC_Os07g03350.1 LOC_Os07g03350 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
LOC_Os07g03440.1 LOC_Os07g03440 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
LOC_Os07g09540.1 LOC_Os07g09540 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
LOC_Os07g11430.1 LOC_Os07g11430 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
LOC_Os07g11850.1 LOC_Os07g11850 no hits & (original description: none) 0.08 OrthoFinder output from all 47 species
LOC_Os07g15800.1 LOC_Os07g15800 no hits & (original description: none) 0.11 OrthoFinder output from all 47 species
LOC_Os07g17510.1 LOC_Os07g17510 no hits & (original description: none) 0.09 OrthoFinder output from all 47 species
LOC_Os07g17540.1 LOC_Os07g17540 no hits & (original description: none) 0.07 OrthoFinder output from all 47 species
LOC_Os07g31900.1 LOC_Os07g31900 no hits & (original description: none) 0.1 OrthoFinder output from all 47 species
LOC_Os07g34090.1 LOC_Os07g34090 no hits & (original description: none) 0.08 OrthoFinder output from all 47 species
LOC_Os07g34200.1 LOC_Os07g34200 no hits & (original description: none) 0.07 OrthoFinder output from all 47 species
LOC_Os07g39610.1 LOC_Os07g39610 no hits & (original description: none) 0.1 OrthoFinder output from all 47 species
LOC_Os07g46120.1 LOC_Os07g46120 no hits & (original description: none) 0.08 OrthoFinder output from all 47 species
LOC_Os08g03730.1 LOC_Os08g03730 no hits & (original description: none) 0.14 OrthoFinder output from all 47 species
LOC_Os08g04850.1 LOC_Os08g04850 no hits & (original description: none) 0.08 OrthoFinder output from all 47 species
LOC_Os08g04870.1 LOC_Os08g04870 no hits & (original description: none) 0.11 OrthoFinder output from all 47 species
LOC_Os08g08310.1 LOC_Os08g08310 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
LOC_Os08g08670.1 LOC_Os08g08670 no hits & (original description: none) 0.08 OrthoFinder output from all 47 species
LOC_Os08g08950.1 LOC_Os08g08950 no hits & (original description: none) 0.08 OrthoFinder output from all 47 species
LOC_Os08g11300.1 LOC_Os08g11300 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os08g12280.1 LOC_Os08g12280 no hits & (original description: none) 0.11 OrthoFinder output from all 47 species
LOC_Os08g13300.1 LOC_Os08g13300 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
LOC_Os08g17120.1 LOC_Os08g17120 no hits & (original description: none) 0.07 OrthoFinder output from all 47 species
LOC_Os08g24250.1 LOC_Os08g24250 no hits & (original description: none) 0.07 OrthoFinder output from all 47 species
LOC_Os08g24590.1 LOC_Os08g24590 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
LOC_Os08g26280.1 LOC_Os08g26280 no hits & (original description: none) 0.08 OrthoFinder output from all 47 species
LOC_Os08g34590.1 LOC_Os08g34590 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
LOC_Os09g01900.1 LOC_Os09g01900 no hits & (original description: none) 0.07 OrthoFinder output from all 47 species
LOC_Os09g02090.1 LOC_Os09g02090 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
LOC_Os09g03040.1 LOC_Os09g03040 no hits & (original description: none) 0.13 OrthoFinder output from all 47 species
LOC_Os09g06700.1 LOC_Os09g06700 no hits & (original description: none) 0.09 OrthoFinder output from all 47 species
LOC_Os09g07330.1 LOC_Os09g07330 no hits & (original description: none) 0.08 OrthoFinder output from all 47 species
LOC_Os09g09060.1 LOC_Os09g09060 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
LOC_Os09g09150.1 LOC_Os09g09150 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
LOC_Os09g09420.1 LOC_Os09g09420 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
LOC_Os09g11060.1 LOC_Os09g11060 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os09g13900.1 LOC_Os09g13900 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
LOC_Os09g14260.1 LOC_Os09g14260 Glutathione S-transferase T3 OS=Arabidopsis thaliana... 0.09 OrthoFinder output from all 47 species
LOC_Os09g16890.1 LOC_Os09g16890 no hits & (original description: none) 0.08 OrthoFinder output from all 47 species
LOC_Os09g17290.1 LOC_Os09g17290 no hits & (original description: none) 0.1 OrthoFinder output from all 47 species
LOC_Os09g18370.1 LOC_Os09g18370 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
LOC_Os09g20130.1 LOC_Os09g20130 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
LOC_Os09g20160.1 LOC_Os09g20160 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
LOC_Os09g25240.1 LOC_Os09g25240 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os10g02010.1 LOC_Os10g02010 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
LOC_Os10g06660.1 LOC_Os10g06660 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
LOC_Os10g07554.1 LOC_Os10g07554 no hits & (original description: none) 0.1 OrthoFinder output from all 47 species
LOC_Os10g07562.1 LOC_Os10g07562 no hits & (original description: none) 0.08 OrthoFinder output from all 47 species
LOC_Os10g08360.1 LOC_Os10g08360 no hits & (original description: none) 0.09 OrthoFinder output from all 47 species
LOC_Os10g08370.1 LOC_Os10g08370 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
LOC_Os10g08650.1 LOC_Os10g08650 no hits & (original description: none) 0.1 OrthoFinder output from all 47 species
LOC_Os10g16800.1 LOC_Os10g16800 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
LOC_Os10g19326.1 LOC_Os10g19326 no hits & (original description: none) 0.09 OrthoFinder output from all 47 species
LOC_Os10g26880.1 LOC_Os10g26880 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
LOC_Os10g33480.1 LOC_Os10g33480 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
LOC_Os11g03950.1 LOC_Os11g03950 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
LOC_Os11g14350.1 LOC_Os11g14350 no hits & (original description: none) 0.25 OrthoFinder output from all 47 species
LOC_Os11g17410.1 LOC_Os11g17410 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
LOC_Os11g19550.1 LOC_Os11g19550 no hits & (original description: none) 0.12 OrthoFinder output from all 47 species
LOC_Os11g23810.1 LOC_Os11g23810 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
LOC_Os11g24870.1 LOC_Os11g24870 no hits & (original description: none) 0.08 OrthoFinder output from all 47 species
LOC_Os11g35470.1 LOC_Os11g35470 no hits & (original description: none) 0.07 OrthoFinder output from all 47 species
LOC_Os11g38456.1 LOC_Os11g38456 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
LOC_Os11g44100.1 LOC_Os11g44100 no hits & (original description: none) 0.1 OrthoFinder output from all 47 species
LOC_Os11g45490.1 LOC_Os11g45490 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
LOC_Os12g01640.1 LOC_Os12g01640 no hits & (original description: none) 0.11 OrthoFinder output from all 47 species
LOC_Os12g01870.1 LOC_Os12g01870 no hits & (original description: none) 0.11 OrthoFinder output from all 47 species
LOC_Os12g05240.1 LOC_Os12g05240 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
LOC_Os12g11600.1 LOC_Os12g11600 no hits & (original description: none) 0.15 OrthoFinder output from all 47 species
LOC_Os12g13080.1 LOC_Os12g13080 no hits & (original description: none) 0.12 OrthoFinder output from all 47 species
LOC_Os12g14200.1 LOC_Os12g14200 no hits & (original description: none) 0.15 OrthoFinder output from all 47 species
LOC_Os12g14650.1 LOC_Os12g14650 no hits & (original description: none) 0.13 OrthoFinder output from all 47 species
LOC_Os12g14820.1 LOC_Os12g14820 no hits & (original description: none) 0.15 OrthoFinder output from all 47 species
LOC_Os12g16400.1 LOC_Os12g16400 no hits & (original description: none) 0.18 OrthoFinder output from all 47 species
LOC_Os12g22910.1 LOC_Os12g22910 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
LOC_Os12g23240.1 LOC_Os12g23240 no hits & (original description: none) 0.14 OrthoFinder output from all 47 species
LOC_Os12g24680.1 LOC_Os12g24680 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
LOC_Os12g25300.1 LOC_Os12g25300 no hits & (original description: none) 0.15 OrthoFinder output from all 47 species
LOC_Os12g26070.1 LOC_Os12g26070 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
LOC_Os12g28740.1 LOC_Os12g28740 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
LOC_Os12g33060.1 PIN5, LOC_Os12g33060 auxin transporter (PIN). auxin efflux transporter (PIN) 0.05 OrthoFinder output from all 47 species
LOC_Os12g36480.1 LOC_Os12g36480 no hits & (original description: none) 0.08 OrthoFinder output from all 47 species
LOC_Os12g36990.1 LOC_Os12g36990 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
LOC_Os12g37240.1 LOC_Os12g37240 no hits & (original description: none) 0.12 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004521 endoribonuclease activity IEP HCCA
MF GO:0004523 RNA-DNA hybrid ribonuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP HCCA
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP HCCA
InterPro domains Description Start Stop
IPR025452 DUF4218 4 116
No external refs found!