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  5. LOC_Os01g37050.1

LOC_Os01g37050.1 (ATRTL2, RTL2, LOC_Os01g37050)


Aliases : ATRTL2, RTL2, LOC_Os01g37050

Description : Ribonuclease 3-like protein 1 OS=Oryza sativa subsp. japonica (sp|q5jk90|rtl1_orysj : 384.0)


Gene families : OG0000378 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000378_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g37050.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00007p00251840 ATRTL2, RTL2,... RNA biosynthesis.siRNA biogenesis.RTL2 ribonuclease-III... 0.03 OrthoFinder output from all 47 species
Dac_g10602 DCL1, CAF,... endoribonuclease (DCL2) of transacting siRNA pathway &... 0.02 OrthoFinder output from all 47 species
Dac_g32180 DCL1, CAF,... endoribonuclease *(DCL3) & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g37376 ATDCL2, DCL2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g19703 DCL4, ATDCL4 endoribonuclease (DCL4) of transacting siRNA pathway &... 0.02 OrthoFinder output from all 47 species
Solyc11g008540.3.1 ATDCL2, DCL2,... Endoribonuclease Dicer homolog 2 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Solyc12g014410.2.1 ATRTL2, RTL2,... ribonuclease (RTL2) 0.02 OrthoFinder output from all 47 species
Spa_g38746 DCL1, CAF,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g29214 DCL4, ATDCL4 endoribonuclease (DCL4) of transacTing siRNA pathway &... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004525 ribonuclease III activity IEA Interproscan
BP GO:0006396 RNA processing IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0004611 phosphoenolpyruvate carboxykinase activity IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006099 tricarboxylic acid cycle IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0008272 sulfate transport IEP HCCA
MF GO:0008964 phosphoenolpyruvate carboxylase activity IEP HCCA
MF GO:0015103 inorganic anion transmembrane transporter activity IEP HCCA
MF GO:0015116 sulfate transmembrane transporter activity IEP HCCA
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP HCCA
BP GO:0015698 inorganic anion transport IEP HCCA
BP GO:0015977 carbon fixation IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016829 lyase activity IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0016831 carboxy-lyase activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0046983 protein dimerization activity IEP HCCA
BP GO:0072348 sulfur compound transport IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
MF GO:1901682 sulfur compound transmembrane transporter activity IEP HCCA
InterPro domains Description Start Stop
IPR000999 RNase_III_dom 62 167
No external refs found!