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  5. LOC_Os01g37980.1

LOC_Os01g37980.1 (ATVTI13, VTI13, LOC_Os01g37980)


Aliases : ATVTI13, VTI13, LOC_Os01g37980

Description : VTI group Qb-type SNARE protein


Gene families : OG0002267 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002267_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g37980.1
Cluster HCCA: Cluster_75

Target Alias Description ECC score Gene Family Method Actions
Adi_g008513 SGR4, ZIG1,... Qb-type VTI-group component of SNARE membrane fusion... 0.03 OrthoFinder output from all 47 species
Aop_g25830 SGR4, ZIG1,... Qb-type VTI-group component of SNARE membrane fusion... 0.02 OrthoFinder output from all 47 species
Azfi_s0002.g001214 SGR4, ZIG1,... Qb-type VTI-group component of SNARE membrane fusion... 0.02 OrthoFinder output from all 47 species
Azfi_s0069.g036538 SGR4, ZIG1,... Qb-type VTI-group component of SNARE membrane fusion... 0.02 OrthoFinder output from all 47 species
Ceric.06G059500.1 SGR4, ZIG1,... Qb-type VTI-group component of SNARE membrane fusion... 0.05 OrthoFinder output from all 47 species
Dcu_g40879 ATVTI13, VTI13 Qb-type VTI-group component of SNARE membrane fusion... 0.03 OrthoFinder output from all 47 species
Ehy_g07395 ATVTI13, VTI13 Qb-type VTI-group component of SNARE membrane fusion... 0.03 OrthoFinder output from all 47 species
GSVIVT01007964001 ATVTI13, VTI13 Vesicle trafficking.SNARE target membrane recognition... 0.04 OrthoFinder output from all 47 species
Pp3c11_5240V3.1 ATVTI13, VTI13,... Vesicle transport v-SNARE family protein 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000290 SGR4, ZIG1,... Qb-type VTI-group component of SNARE membrane fusion... 0.02 OrthoFinder output from all 47 species
Sam_g24606 No alias Qb-type VTI-group component of SNARE membrane fusion... 0.04 OrthoFinder output from all 47 species
Solyc05g013050.3.1 VTI12, VTI1B,... VTI group Qb-type SNARE protein 0.05 OrthoFinder output from all 47 species
Tin_g43976 SGR4, ZIG1,... Qb-type VTI-group component of SNARE membrane fusion... 0.02 OrthoFinder output from all 47 species
Zm00001e027750_P001 ATVTI13, VTI13,... VTI group Qb-type SNARE protein 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006886 intracellular protein transport IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005509 calcium ion binding IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
InterPro domains Description Start Stop
IPR007705 Vesicle_trsprt_v-SNARE_N 12 90
No external refs found!