1. Home
  2. Species
  3. Oryza sativa
  4. Sequence
  5. LOC_Os01g38120.1

LOC_Os01g38120.1 (LOC_Os01g38120)


Aliases : LOC_Os01g38120

Description : UPF0481 protein At3g47200 OS=Arabidopsis thaliana (sp|q9sd53|y3720_arath : 137.0)


Gene families : OG0000125 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000125_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g38120.1
Cluster HCCA: Cluster_73

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00013p00075010 evm_27.TU.AmTr_v1... UPF0481 protein At3g47200 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
AMTR_s00016p00254630 evm_27.TU.AmTr_v1... UPF0481 protein At3g47200 OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
AMTR_s00023p00151010 evm_27.TU.AmTr_v1... No description available 0.02 OrthoFinder output from all 47 species
AMTR_s00023p00152840 evm_27.TU.AmTr_v1... No description available 0.03 OrthoFinder output from all 47 species
AMTR_s00023p00152880 evm_27.TU.AmTr_v1... No description available 0.05 OrthoFinder output from all 47 species
AMTR_s00023p00153750 evm_27.TU.AmTr_v1... UPF0481 protein At3g47200 OS=Arabidopsis thaliana 0.06 OrthoFinder output from all 47 species
AMTR_s00023p00153970 evm_27.TU.AmTr_v1... No description available 0.06 OrthoFinder output from all 47 species
AMTR_s00023p00170960 evm_27.TU.AmTr_v1... No description available 0.03 OrthoFinder output from all 47 species
AMTR_s00023p00171000 evm_27.TU.AmTr_v1... No description available 0.04 OrthoFinder output from all 47 species
AMTR_s00023p00171820 evm_27.TU.AmTr_v1... No description available 0.04 OrthoFinder output from all 47 species
AMTR_s00033p00169500 evm_27.TU.AmTr_v1... Putative UPF0481 protein At3g02645 OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
AMTR_s00033p00170840 evm_27.TU.AmTr_v1... Putative UPF0481 protein At3g02645 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AMTR_s00033p00171210 evm_27.TU.AmTr_v1... Putative UPF0481 protein At3g02645 OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
AT1G65985 No alias Plant protein of unknown function (DUF247) 0.04 OrthoFinder output from all 47 species
AT1G67150 No alias Plant protein of unknown function (DUF247) 0.04 OrthoFinder output from all 47 species
AT2G36430 No alias Plant protein of unknown function (DUF247) 0.04 OrthoFinder output from all 47 species
AT3G44710 No alias Plant protein of unknown function (DUF247) 0.04 OrthoFinder output from all 47 species
AT3G47250 No alias Plant protein of unknown function (DUF247) 0.05 OrthoFinder output from all 47 species
AT3G50130 No alias Plant protein of unknown function (DUF247) 0.03 OrthoFinder output from all 47 species
AT3G50140 No alias Plant protein of unknown function (DUF247) 0.02 OrthoFinder output from all 47 species
AT3G50150 No alias Plant protein of unknown function (DUF247) 0.02 OrthoFinder output from all 47 species
AT3G50160 No alias Plant protein of unknown function (DUF247) 0.03 OrthoFinder output from all 47 species
AT3G50190 No alias Plant protein of unknown function (DUF247) 0.03 OrthoFinder output from all 47 species
AT3G60470 No alias Plant protein of unknown function (DUF247) 0.04 OrthoFinder output from all 47 species
AT5G22540 No alias Plant protein of unknown function (DUF247) 0.03 OrthoFinder output from all 47 species
AT5G22550 No alias Plant protein of unknown function (DUF247) 0.05 OrthoFinder output from all 47 species
Adi_g050777 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g02345 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g16580 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g06779 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g07039 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g09662 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g12369 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g19466 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g26067 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g29496 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g58761 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g03031 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g30226 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g02375 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g04471 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g10768 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g14217 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g31495 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene08488.t1 Aspi01Gene08488 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene08489.t1 Aspi01Gene08489 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene08491.t1 Aspi01Gene08491 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene08493.t1 Aspi01Gene08493 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene19103.t1 Aspi01Gene19103 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene22022.t1 Aspi01Gene22022 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene22023.t1 Aspi01Gene22023 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene22026.t1 Aspi01Gene22026 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene29768.t1 Aspi01Gene29768 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene48412.t1 Aspi01Gene48412 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene53577.t1 Aspi01Gene53577 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene55382.t1 Aspi01Gene55382 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene62946.t1 Aspi01Gene62946 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene70527.t1 Aspi01Gene70527 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene72945.t1 Aspi01Gene72945 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g03828 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g24477 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g45295 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.06G018800.1 Ceric.06G018800 not classified & original description: pacid=50620702... 0.03 OrthoFinder output from all 47 species
Ceric.08G043100.1 Ceric.08G043100 not classified & original description: pacid=50638846... 0.06 OrthoFinder output from all 47 species
Dac_g00185 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g22021 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g22446 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g23793 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g36449 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g37257 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g39129 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dac_g41114 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g19005 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g26945 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g27578 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g46391 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g48193 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01014791001 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
GSVIVT01014793001 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
GSVIVT01017510001 No alias Putative UPF0481 protein At3g02645 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
GSVIVT01017512001 No alias Putative UPF0481 protein At3g02645 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
GSVIVT01033794001 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
GSVIVT01033984001 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
GSVIVT01035823001 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Gb_03494 No alias no hits & (original description: none) 0.07 OrthoFinder output from all 47 species
Gb_11125 No alias Putative UPF0481 protein At3g02645 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Gb_15961 No alias Putative UPF0481 protein At3g02645 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Gb_20041 No alias Putative UPF0481 protein At3g02645 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
Gb_20047 No alias Putative UPF0481 protein At3g02645 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Gb_20052 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Gb_20970 No alias Putative UPF0481 protein At3g02645 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
Gb_23451 No alias Putative UPF0481 protein At3g02645 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Gb_27805 No alias no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
Gb_28287 No alias Putative UPF0481 protein At3g02645 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Gb_28782 No alias Putative UPF0481 protein At3g02645 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
Gb_36108 No alias Putative UPF0481 protein At3g02645 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Gb_36109 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Gb_36111 No alias Putative UPF0481 protein At3g02645 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Gb_37285 No alias Putative UPF0481 protein At3g02645 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
LOC_Os02g15500.1 LOC_Os02g15500 UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
LOC_Os05g15230.1 LOC_Os05g15230 UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
LOC_Os06g08120.1 LOC_Os06g08120 Putative UPF0481 protein At3g02645 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
LOC_Os08g30520.1 LOC_Os08g30520 UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.06 OrthoFinder output from all 47 species
LOC_Os08g42570.1 LOC_Os08g42570 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
LOC_Os11g33394.1 LOC_Os11g33394 UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
LOC_Os11g33430.1 LOC_Os11g33430 UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species
Len_g28160 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g35601 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g42582 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g11757 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g33508 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g39739 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_10333153g0010 No alias Putative UPF0481 protein At3g02645 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
MA_10426384g0010 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
MA_10434321g0020 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
MA_10436979g0010 No alias Putative UPF0481 protein At3g02645 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
MA_109716g0010 No alias Putative UPF0481 protein At3g02645 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
MA_120951g0020 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_155516g0010 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
MA_413488g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_6919317g0010 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
MA_6958038g0010 No alias Putative UPF0481 protein At3g02645 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
MA_749769g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_9718623g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Mp2g23330.1 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Mp3g02930.1 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Mp7g16570.1 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Msp_g14823 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g07146 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g09756 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g29528 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g19917 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g26242 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g17300 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g37513 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g57526 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g66141 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g20007 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g30785 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g32233 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g32235 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g54723 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0039.g012180 No alias not classified & original description: CDS=1-1593 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0044.g012986 No alias not classified & original description: CDS=1-1557 0.02 OrthoFinder output from all 47 species
Solyc03g117260.2.1 Solyc03g117260 Putative UPF0481 protein At3g02645 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Solyc04g008920.1.1 Solyc04g008920 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Solyc04g016020.1.1 Solyc04g016020 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Solyc09g009230.2.1 Solyc09g009230 UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Spa_g00455 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g26898 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g27969 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g10726 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g15406 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g24899 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e036342_P001 Zm00001e036342 Putative UPF0481 protein At3g02645 OS=Arabidopsis... 0.08 OrthoFinder output from all 47 species
Zm00001e041187_P001 Zm00001e041187 UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0004180 carboxypeptidase activity IEP HCCA
MF GO:0004185 serine-type carboxypeptidase activity IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
MF GO:0008238 exopeptidase activity IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
MF GO:0070008 serine-type exopeptidase activity IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR004158 DUF247_pln 36 406
No external refs found!