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  5. LOC_Os01g40670.1

LOC_Os01g40670.1 (ATTRB1, TRB1, LOC_Os01g40670)


Aliases : ATTRB1, TRB1, LOC_Os01g40670

Description : PRC2-recruiting factor (TRB). transcription factor (MYB-related)


Gene families : OG0000994 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000994_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g40670.1

Target Alias Description ECC score Gene Family Method Actions
Adi_g001116 ATTRB1, TRB1 PRC2-recruiting factor (TRB) of PRC2 histone methylation... 0.03 OrthoFinder output from all 47 species
Ceric.38G003600.1 ATTRB1, TRB1,... not classified & original description: pacid=50579492... 0.04 OrthoFinder output from all 47 species
Nbi_g20185 ATTRB1, TRB1 PRC2-recruiting factor (TRB) of PRC2 histone methylation... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0102.g019898 ATTRB1, TRB1 not classified & original description: CDS=142-1026 0.02 OrthoFinder output from all 47 species
Zm00001e012405_P001 ATTRB1, TRB1,... PRC2-recruiting factor (TRB). transcription factor (MYB-related) 0.03 OrthoFinder output from all 47 species
Zm00001e016829_P002 ATTRB1, TRB1,... PRC2-recruiting factor (TRB). transcription factor (MYB-related) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
BP GO:0006334 nucleosome assembly IEA Interproscan
CC GO:0042025 host cell nucleus IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005543 phospholipid binding IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
MF GO:0035091 phosphatidylinositol binding IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
InterPro domains Description Start Stop
IPR005818 Histone_H1/H5_H15 130 186
IPR001005 SANT/Myb 5 56
No external refs found!