LOC_Os01g43590.1 (AT-HSFC1, HSFC1,...)

Aliases : AT-HSFC1, HSFC1, LOC_Os01g43590

Description : transcription factor (HSF)

Gene families : OG0000093 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000093_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os01g43590.1

Target	Alias	Description	ECC score	Gene Family Method
AT2G26150	HSFA2, ATHSFA2	heat shock transcription factor A2	0.04	OrthoFinder output from all 47 species
AT3G22830	AT-HSFA6B, HSFA6B	heat shock transcription factor A6B	0.02	OrthoFinder output from all 47 species
AT3G51910	AT-HSFA7A, HSFA7A	heat shock transcription factor A7A	0.07	OrthoFinder output from all 47 species
AT3G63350	HSFA7B, AT-HSFA7B	winged-helix DNA-binding transcription factor family protein	0.04	OrthoFinder output from all 47 species
Adi_g036860	ATHSF1, HSF1,...	HSF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aev_g32508	HSFA1B, ATHSF3,...	transcriptional regulator *(HsfA1) & original description: none	0.03	OrthoFinder output from all 47 species
Als_g11376	HSFB4, SCZ, AT-HSFB4	HSF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Als_g27612	HSFB4, SCZ, AT-HSFB4	HSF-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Aop_g08806	HSFB4, SCZ, AT-HSFB4	HSF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g22391	AT-HSFA6B, HSFA6B	HSF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene27811.t1	AT-HSFA6B,...	HSF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene56974.t1	AT-HSFA6B,...	HSF-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Dde_g47312	ATHSF1, HSF1,...	HSF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g05680	HSFB4, SCZ, AT-HSFB4	HSF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01003118001	AT-HSFA6B, HSFA6B	RNA biosynthesis.transcriptional activation.HSF (heat...	0.03	OrthoFinder output from all 47 species
GSVIVT01018041001	AT-HSFA6B, HSFA6B	RNA biosynthesis.transcriptional activation.HSF (heat...	0.03	OrthoFinder output from all 47 species
GSVIVT01020781001	HSFA4C, RHA1, AT-HSFA4C	RNA biosynthesis.transcriptional activation.HSF (heat...	0.02	OrthoFinder output from all 47 species
GSVIVT01022134001	HSF4, HSFB1,...	RNA biosynthesis.transcriptional activation.HSF (heat...	0.03	OrthoFinder output from all 47 species
GSVIVT01035385001	HSFA2, ATHSFA2	RNA biosynthesis.transcriptional activation.HSF (heat...	0.04	OrthoFinder output from all 47 species
Gb_14573	HSFB4, SCZ, AT-HSFB4	transcription factor (HSF)	0.03	OrthoFinder output from all 47 species
LOC_Os01g54550.1	HSFA4C, RHA1,...	transcription factor (HSF)	0.05	OrthoFinder output from all 47 species
LOC_Os02g32590.1	HSFA3, AT-HSFA3,...	transcription factor (HSF)	0.03	OrthoFinder output from all 47 species
LOC_Os03g25120.1	HSFB4, SCZ,...	transcription factor (HSF)	0.06	OrthoFinder output from all 47 species
Len_g46469	HSF4, HSFB1,...	HSF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g31020	AT-HSFB2A, HSFB2A	HSF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
MA_29913g0010	AT-HSFA6B, HSFA6B	transcription factor (HSF). transcriptional regulator (HsfA1)	0.07	OrthoFinder output from all 47 species
MA_9434330g0010	HSFB4, SCZ, AT-HSFB4	transcription factor (HSF)	0.02	OrthoFinder output from all 47 species
Nbi_g00744	AT-HSFB2B, HSFB2B	HSF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g01134	ATHSF1, HSF1,...	HSF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g18363	HSFB4, SCZ, AT-HSFB4	HSF-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Sam_g09452	No alias	transcriptional regulator *(HsfA1) & original description: none	0.02	OrthoFinder output from all 47 species
Solyc06g053960.3.1	AT-HSFA6B,...	transcription factor (HSF)	0.02	OrthoFinder output from all 47 species
Solyc08g062960.4.1	HSFA2, ATHSFA2,...	transcription factor (HSF)	0.03	OrthoFinder output from all 47 species
Spa_g08441	HSFA1E, ATHSFA1E	HSF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Spa_g52649	ATHSF1, HSF1,...	HSF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Spa_g53750	HSF4, HSFB1,...	HSF-type transcription factor & original description: none	0.06	OrthoFinder output from all 47 species
Spa_g55040	HSF4, HSFB1,...	HSF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g55789	AT-HSFA6B, HSFA6B	HSF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g04512	HSFB4, SCZ, AT-HSFB4	HSF-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Zm00001e009944_P001	HSF4, HSFB1,...	transcription factor (HSF)	0.05	OrthoFinder output from all 47 species
Zm00001e032174_P001	HSFA4C, RHA1,...	transcription factor (HSF)	0.03	OrthoFinder output from all 47 species
Zm00001e034782_P002	AT-HSFB2A,...	transcription factor (HSF)	0.03	OrthoFinder output from all 47 species
Zm00001e035680_P002	HSFB4, SCZ,...	transcription factor (HSF)	0.03	OrthoFinder output from all 47 species
Zm00001e038685_P001	ATHSF1, HSF1,...	transcription factor (HSF)	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
CC	GO:0018995	host cellular component	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0033643	host cell part	None	Extended
CC	GO:0033646	host intracellular part	None	Extended
CC	GO:0033647	host intracellular organelle	None	Extended
CC	GO:0033648	host intracellular membrane-bounded organelle	None	Extended
CC	GO:0042025	host cell nucleus	IEA	Interproscan
MF	GO:0043565	sequence-specific DNA binding	IEA	Interproscan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	IEP	HCCA
CC	GO:0005576	extracellular region	IEP	HCCA
CC	GO:0005618	cell wall	IEP	HCCA
BP	GO:0005976	polysaccharide metabolic process	IEP	HCCA
BP	GO:0006073	cellular glucan metabolic process	IEP	HCCA
BP	GO:0006082	organic acid metabolic process	IEP	HCCA
BP	GO:0006576	biogenic amine metabolic process	IEP	HCCA
BP	GO:0009308	amine metabolic process	IEP	HCCA
BP	GO:0009309	amine biosynthetic process	IEP	HCCA
BP	GO:0009987	cellular process	IEP	HCCA
MF	GO:0015267	channel activity	IEP	HCCA
BP	GO:0016053	organic acid biosynthetic process	IEP	HCCA
MF	GO:0016740	transferase activity	IEP	HCCA
MF	GO:0016758	hexosyltransferase activity	IEP	HCCA
MF	GO:0016762	xyloglucan:xyloglucosyl transferase activity	IEP	HCCA
MF	GO:0016765	transferase activity, transferring alkyl or aryl (other than methyl) groups	IEP	HCCA
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	IEP	HCCA
BP	GO:0018130	heterocycle biosynthetic process	IEP	HCCA
BP	GO:0019752	carboxylic acid metabolic process	IEP	HCCA
MF	GO:0022803	passive transmembrane transporter activity	IEP	HCCA
CC	GO:0030312	external encapsulating structure	IEP	HCCA
MF	GO:0030410	nicotianamine synthase activity	IEP	HCCA
BP	GO:0030417	nicotianamine metabolic process	IEP	HCCA
BP	GO:0030418	nicotianamine biosynthetic process	IEP	HCCA
BP	GO:0042401	biogenic amine biosynthetic process	IEP	HCCA
BP	GO:0043436	oxoacid metabolic process	IEP	HCCA
BP	GO:0044042	glucan metabolic process	IEP	HCCA
BP	GO:0044262	cellular carbohydrate metabolic process	IEP	HCCA
BP	GO:0044264	cellular polysaccharide metabolic process	IEP	HCCA
BP	GO:0044283	small molecule biosynthetic process	IEP	HCCA
BP	GO:0046394	carboxylic acid biosynthetic process	IEP	HCCA
MF	GO:0046527	glucosyltransferase activity	IEP	HCCA
CC	GO:0048046	apoplast	IEP	HCCA
BP	GO:0072350	tricarboxylic acid metabolic process	IEP	HCCA
BP	GO:0072351	tricarboxylic acid biosynthetic process	IEP	HCCA
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000232	HSF_DNA-bd	27	125

External Links

No external refs found!

LOC_Os01g43590.1 (AT-HSFC1, HSFC1,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation