Aliases : LOC_Os01g43680
Description : transcription factor (bHLH)
Gene families : OG0000019 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: LOC_Os01g43680.3 | |
| Cluster | HCCA: Cluster_174 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00022p00228970 | evm_27.TU.AmTr_v1... | RNA biosynthesis.transcriptional activation.bHLH... | 0.03 | OrthoFinder output from all 47 species | |
| AMTR_s00045p00141060 | PIF3, POC1,... | External stimuli response.light.red/far red light.PIF... | 0.03 | OrthoFinder output from all 47 species | |
| AT2G42280 | No alias | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | 0.05 | OrthoFinder output from all 47 species | |
| AT3G23690 | No alias | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | 0.03 | OrthoFinder output from all 47 species | |
| AT3G59060 | PIL6, PIF5 | phytochrome interacting factor 3-like 6 | 0.02 | OrthoFinder output from all 47 species | |
| AT4G36930 | SPT | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | 0.01 | OrthoFinder output from all 47 species | |
| Adi_g048981 | No alias | regulatory protein (CIB) of blue light perception &... | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g053074 | ATRSL1, RSL1 | bHLH-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g109684 | No alias | bHLH-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aev_g23312 | LRL3 | bHLH-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Als_g01540 | CIB1 | regulatory protein (CIB) of blue light perception &... | 0.03 | OrthoFinder output from all 47 species | |
| Als_g04401 | SPT | bHLH-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Als_g09007 | CIB1 | regulatory protein (CIB) of blue light perception &... | 0.02 | OrthoFinder output from all 47 species | |
| Als_g14321 | No alias | bHLH-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Als_g32315 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Als_g33578 | PIF3, POC1, PAP3 | bHLH-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Als_g48384 | LRL3 | bHLH-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Als_g61959 | PIL5, PIF1 | bHLH-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aob_g21168 | LRL3 | bHLH-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aob_g24196 | No alias | regulatory protein (CIB) of blue light perception &... | 0.02 | OrthoFinder output from all 47 species | |
| Aob_g31617 | No alias | regulatory protein (CIB) of blue light perception &... | 0.02 | OrthoFinder output from all 47 species | |
| Aop_g63732 | No alias | bHLH-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene09999.t1 | Aspi01Gene09999 | bHLH-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Azfi_s0075.g037605 | LRL3 | bHLH-type transcription factor & original description:... | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0173.g055808 | SPT | bHLH-type transcription factor & original description:... | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g04118 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g15803 | No alias | regulatory protein (CIB) of blue light perception &... | 0.02 | OrthoFinder output from all 47 species | |
| Cba_g17686 | No alias | regulatory protein (CIB) of blue light perception &... | 0.02 | OrthoFinder output from all 47 species | |
| Ceric.04G038900.1 | LRL3, Ceric.04G038900 | bHLH-type transcription factor & original description:... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.39G010000.1 | LRL3, Ceric.39G010000 | bHLH-type transcription factor & original description:... | 0.04 | OrthoFinder output from all 47 species | |
| Cre14.g620850 | BIM2 | RNA biosynthesis.transcriptional activation.bHLH... | 0.01 | OrthoFinder output from all 47 species | |
| Dac_g09242 | LRL3 | bHLH-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Dac_g10732 | No alias | bHLH-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dac_g22699 | LRL3 | bHLH-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dcu_g03880 | LRL3 | bHLH-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dcu_g08844 | LRL3 | bHLH-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Dcu_g17517 | HEC3 | bHLH-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dde_g18718 | SPT | bHLH-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ehy_g03657 | LRL3 | bHLH-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ehy_g05786 | SPT | bHLH-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ehy_g18466 | LRL3 | bHLH-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ehy_g31834 | SPT | bHLH-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| GSVIVT01008628001 | No alias | External stimuli response.light.UV-A/blue... | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01013553001 | No alias | RNA biosynthesis.transcriptional activation.bHLH... | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01018942001 | CIB1 | External stimuli response.light.UV-A/blue... | 0.02 | OrthoFinder output from all 47 species | |
| GSVIVT01020121001 | No alias | External stimuli response.light.UV-A/blue... | 0.04 | OrthoFinder output from all 47 species | |
| GSVIVT01021787001 | UNE12 | RNA biosynthesis.transcriptional activation.bHLH... | 0.04 | OrthoFinder output from all 47 species | |
| GSVIVT01025313001 | No alias | RNA biosynthesis.transcriptional activation.bHLH... | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01032055001 | No alias | RNA biosynthesis.transcriptional activation.bHLH... | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01033356001 | No alias | RNA biosynthesis.transcriptional activation.bHLH... | 0.03 | OrthoFinder output from all 47 species | |
| Gb_05320 | LRL3 | transcription factor (bHLH) | 0.02 | OrthoFinder output from all 47 species | |
| Gb_21366 | UNE12 | no hits & (original description: none) | 0.03 | OrthoFinder output from all 47 species | |
| Gb_28850 | No alias | transcription factor (bHLH) | 0.02 | OrthoFinder output from all 47 species | |
| Gb_30387 | UNE10 | transcription factor (bHLH) | 0.02 | OrthoFinder output from all 47 species | |
| LOC_Os03g55550.1 | RSL2, LOC_Os03g55550 | transcription factor (bHLH) | 0.02 | OrthoFinder output from all 47 species | |
| LOC_Os06g09370.2 | LRL3, LOC_Os06g09370 | transcription factor (bHLH) | 0.05 | OrthoFinder output from all 47 species | |
| Len_g13668 | LRL3 | bHLH-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| MA_158850g0010 | LRL3 | transcription factor (bHLH) | 0.04 | OrthoFinder output from all 47 species | |
| MA_9198304g0010 | No alias | no hits & (original description: none) | 0.03 | OrthoFinder output from all 47 species | |
| Msp_g15574 | No alias | bHLH-type transcription factor & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Nbi_g03137 | No alias | regulatory protein (CIB) of blue light perception &... | 0.02 | OrthoFinder output from all 47 species | |
| Nbi_g07688 | PIF3, POC1, PAP3 | bHLH-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Nbi_g11326 | LRL3 | bHLH-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Nbi_g18394 | LRL3 | bHLH-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g08799 | No alias | bHLH-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ore_g26644 | LRL3 | bHLH-type transcription factor & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ore_g44898 | SPT | bHLH-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Pir_g01002 | LRL1 | bHLH-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pir_g10832 | LRL3 | bHLH-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Pir_g26340 | No alias | regulatory protein (CIB) of blue light perception &... | 0.02 | OrthoFinder output from all 47 species | |
| Pir_g38111 | No alias | regulatory protein (CIB) of blue light perception &... | 0.03 | OrthoFinder output from all 47 species | |
| Pir_g45935 | No alias | regulatory protein (CIB) of blue light perception &... | 0.02 | OrthoFinder output from all 47 species | |
| Pnu_g08374 | LRL3 | bHLH-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pnu_g21397 | RSL4 | bHLH-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0020.g008184 | No alias | bHLH-type transcription factor & original description: CDS=1-762 | 0.03 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0033.g011126 | SPT | bHLH-type transcription factor & original description: CDS=1-1488 | 0.02 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0157.g023707 | No alias | bHLH-type transcription factor & original description:... | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g14482 | No alias | bHLH-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g17031 | No alias | bHLH-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g27072 | No alias | bHLH-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Smo439190 | No alias | External stimuli response.light.UV-A/blue... | 0.02 | OrthoFinder output from all 47 species | |
| Solyc01g107140.3.1 | Solyc01g107140 | transcription factor (bHLH) | 0.03 | OrthoFinder output from all 47 species | |
| Solyc02g070880.1.1 | Solyc02g070880 | transcription factor (bHLH) | 0.02 | OrthoFinder output from all 47 species | |
| Solyc03g097820.2.1 | Solyc03g097820 | transcription factor (bHLH). transcriptional regulator (CIB) | 0.01 | OrthoFinder output from all 47 species | |
| Solyc04g005130.3.1 | Solyc04g005130 | transcription factor (bHLH). transcriptional regulator (CIB) | 0.02 | OrthoFinder output from all 47 species | |
| Solyc05g006650.3.1 | Solyc05g006650 | transcription factor (bHLH). transcriptional regulator (CIB) | 0.02 | OrthoFinder output from all 47 species | |
| Solyc06g008030.3.1 | PIL5, PIF1,... | transcription factor (bHLH). PIF red/far-red light... | 0.02 | OrthoFinder output from all 47 species | |
| Solyc07g005400.3.1 | LRL1, Solyc07g005400 | transcription factor (bHLH) | 0.02 | OrthoFinder output from all 47 species | |
| Spa_g08006 | PIF3, POC1, PAP3 | bHLH-type transcription factor & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Spa_g14752 | No alias | bHLH-type transcription factor & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Spa_g29895 | LRL3 | bHLH-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Tin_g16970 | CIB1 | regulatory protein (CIB) of blue light perception &... | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e010540_P001 | Zm00001e010540 | transcription factor (bHLH) | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e011084_P002 | Zm00001e011084 | transcription factor (bHLH). transcriptional regulator (CIB) | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e011866_P002 | UNE12, Zm00001e011866 | transcription factor (bHLH) | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e025656_P001 | RHD6, Zm00001e025656 | transcription factor (bHLH) | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e034605_P003 | Zm00001e034605 | transcription factor (bHLH). transcriptional regulator (CIB) | 0.01 | OrthoFinder output from all 47 species | |
| Zm00001e035219_P001 | Zm00001e035219 | transcription factor (bHLH) | 0.04 | OrthoFinder output from all 47 species | |
| Zm00001e038765_P001 | Zm00001e038765 | transcription factor (bHLH) | 0.02 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005488 | binding | IEP | HCCA |
| MF | GO:0005515 | protein binding | IEP | HCCA |
| BP | GO:0016567 | protein ubiquitination | IEP | HCCA |
| MF | GO:0030554 | adenyl nucleotide binding | IEP | HCCA |
| BP | GO:0032446 | protein modification by small protein conjugation | IEP | HCCA |
| MF | GO:0032553 | ribonucleotide binding | IEP | HCCA |
| MF | GO:0032555 | purine ribonucleotide binding | IEP | HCCA |
| MF | GO:0032559 | adenyl ribonucleotide binding | IEP | HCCA |
| BP | GO:0040008 | regulation of growth | IEP | HCCA |
| MF | GO:0043531 | ADP binding | IEP | HCCA |
| BP | GO:0045927 | positive regulation of growth | IEP | HCCA |
| BP | GO:0048518 | positive regulation of biological process | IEP | HCCA |
| MF | GO:0097367 | carbohydrate derivative binding | IEP | HCCA |
No InterPro domains available for this sequence
| No external refs found! |
