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  5. LOC_Os01g51120.1

LOC_Os01g51120.1 (ATVTI13, VTI13, LOC_Os01g51120)


Aliases : ATVTI13, VTI13, LOC_Os01g51120

Description : VTI group Qb-type SNARE protein


Gene families : OG0002267 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002267_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g51120.1

Target Alias Description ECC score Gene Family Method Actions
AT3G29100 ATVTI13, VTI13 vesicle transport V-snare 13 0.03 OrthoFinder output from all 47 species
Aop_g01060 ATVTI13, VTI13 Qb-type VTI-group component of SNARE membrane fusion... 0.03 OrthoFinder output from all 47 species
Azfi_s0002.g001214 SGR4, ZIG1,... Qb-type VTI-group component of SNARE membrane fusion... 0.03 OrthoFinder output from all 47 species
Ceric.06G059500.1 SGR4, ZIG1,... Qb-type VTI-group component of SNARE membrane fusion... 0.04 OrthoFinder output from all 47 species
Ceric.11G005300.1 ATVTI13, VTI13,... Qb-type VTI-group component of SNARE membrane fusion... 0.03 OrthoFinder output from all 47 species
Cre13.g577500 VTI12, VTI1B, ATVTI12 Vesicle trafficking.SNARE target membrane recognition... 0.02 OrthoFinder output from all 47 species
Dac_g04030 ATVTI13, VTI13 Qb-type VTI-group component of SNARE membrane fusion... 0.02 OrthoFinder output from all 47 species
Dcu_g25235 SGR4, ZIG1,... Qb-type VTI-group component of SNARE membrane fusion... 0.02 OrthoFinder output from all 47 species
GSVIVT01007964001 ATVTI13, VTI13 Vesicle trafficking.SNARE target membrane recognition... 0.03 OrthoFinder output from all 47 species
Mp1g12970.1 SGR4, ZIG1,... VTI group Qb-type SNARE protein 0.03 OrthoFinder output from all 47 species
Nbi_g00258 ATVTI13, VTI13 Qb-type VTI-group component of SNARE membrane fusion... 0.03 OrthoFinder output from all 47 species
Ore_g00227 SGR4, ZIG1,... Qb-type VTI-group component of SNARE membrane fusion... 0.02 OrthoFinder output from all 47 species
Ore_g17845 ATVTI13, VTI13 Qb-type VTI-group component of SNARE membrane fusion... 0.03 OrthoFinder output from all 47 species
Smo146421 SGR4, ZIG1,... Vesicle trafficking.SNARE target membrane recognition... 0.03 OrthoFinder output from all 47 species
Solyc03g115760.3.1 SGR4, ZIG1,... VTI group Qb-type SNARE protein 0.05 OrthoFinder output from all 47 species
Solyc05g013050.3.1 VTI12, VTI1B,... VTI group Qb-type SNARE protein 0.06 OrthoFinder output from all 47 species
Tin_g06403 ATVTI13, VTI13 Qb-type VTI-group component of SNARE membrane fusion... 0.02 OrthoFinder output from all 47 species
Tin_g43976 SGR4, ZIG1,... Qb-type VTI-group component of SNARE membrane fusion... 0.02 OrthoFinder output from all 47 species
Zm00001e020013_P001 ATVTI13, VTI13,... VTI group Qb-type SNARE protein 0.06 OrthoFinder output from all 47 species
Zm00001e028148_P001 ATVTI13, VTI13,... VTI group Qb-type SNARE protein 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006886 intracellular protein transport IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0005777 peroxisome IEP HCCA
BP GO:0007034 vacuolar transport IEP HCCA
BP GO:0009966 regulation of signal transduction IEP HCCA
BP GO:0010646 regulation of cell communication IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
BP GO:0023051 regulation of signaling IEP HCCA
CC GO:0042579 microbody IEP HCCA
BP GO:0048583 regulation of response to stimulus IEP HCCA
InterPro domains Description Start Stop
IPR007705 Vesicle_trsprt_v-SNARE_N 12 90
No external refs found!