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  5. LOC_Os01g52900.1

LOC_Os01g52900.1 (LOC_Os01g52900)


Aliases : LOC_Os01g52900

Description : no hits & (original description: none)


Gene families : OG0001578 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001578_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g52900.1
Cluster HCCA: Cluster_138

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00071p00079410 evm_27.TU.AmTr_v1... No description available 0.03 OrthoFinder output from all 47 species
AMTR_s00071p00081750 evm_27.TU.AmTr_v1... No description available 0.02 OrthoFinder output from all 47 species
Ala_g14539 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene39847.t1 Aspi01Gene39847 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene39865.t1 Aspi01Gene39865 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Azfi_s0059.g034491 No alias not classified & original description: CDS=2-1894 0.03 OrthoFinder output from all 47 species
Azfi_s0506.g073949 No alias not classified & original description: CDS=1-1083 0.02 OrthoFinder output from all 47 species
Dac_g45226 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g13076 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g25027 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g31487 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os12g08900.1 LOC_Os12g08900 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Lfl_g13820 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0139.g022604 No alias not classified & original description: CDS=40-3546 0.02 OrthoFinder output from all 47 species
Smo111238 No alias No description available 0.01 OrthoFinder output from all 47 species
Smo128027 No alias No description available 0.02 OrthoFinder output from all 47 species
Smo91270 No alias No description available 0.02 OrthoFinder output from all 47 species
Solyc11g005830.2.1 Solyc11g005830 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Solyc11g005860.2.1 Solyc11g005860 no hits & (original description: none) 0.08 OrthoFinder output from all 47 species
Zm00001e019911_P001 Zm00001e019911 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Zm00001e021339_P001 Zm00001e021339 no hits & (original description: none) 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003872 6-phosphofructokinase activity IEP HCCA
CC GO:0005779 obsolete integral component of peroxisomal membrane IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006090 pyruvate metabolic process IEP HCCA
BP GO:0006091 generation of precursor metabolites and energy IEP HCCA
BP GO:0006096 glycolytic process IEP HCCA
BP GO:0006163 purine nucleotide metabolic process IEP HCCA
BP GO:0006165 nucleoside diphosphate phosphorylation IEP HCCA
BP GO:0006753 nucleoside phosphate metabolic process IEP HCCA
BP GO:0006757 ATP generation from ADP IEP HCCA
MF GO:0008080 N-acetyltransferase activity IEP HCCA
MF GO:0008443 phosphofructokinase activity IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009117 nucleotide metabolic process IEP HCCA
BP GO:0009132 nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009135 purine nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009141 nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009144 purine nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009150 purine ribonucleotide metabolic process IEP HCCA
BP GO:0009179 purine ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0009185 ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0009199 ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009205 purine ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009259 ribonucleotide metabolic process IEP HCCA
BP GO:0016052 carbohydrate catabolic process IEP HCCA
MF GO:0016407 acetyltransferase activity IEP HCCA
MF GO:0016410 N-acyltransferase activity IEP HCCA
BP GO:0016559 peroxisome fission IEP HCCA
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP HCCA
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0019200 carbohydrate kinase activity IEP HCCA
BP GO:0019637 organophosphate metabolic process IEP HCCA
BP GO:0019693 ribose phosphate metabolic process IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
BP GO:0032787 monocarboxylic acid metabolic process IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0046031 ADP metabolic process IEP HCCA
BP GO:0046034 ATP metabolic process IEP HCCA
BP GO:0046939 nucleotide phosphorylation IEP HCCA
BP GO:0048285 organelle fission IEP HCCA
MF GO:0051213 dioxygenase activity IEP HCCA
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP HCCA
BP GO:0072521 purine-containing compound metabolic process IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
BP GO:1901135 carbohydrate derivative metabolic process IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR000192 Aminotrans_V_dom 85 512
No external refs found!