LOC_Os01g54020.1 (OVA4, LOC_Os01g54020)

Aliases : OVA4, LOC_Os01g54020

Description : tryptophan-tRNA ligase

Gene families : OG0006953 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006953_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os01g54020.1

Target	Alias	Description	ECC score	Gene Family Method
Adi_g049439	OVA4	organellar tryptophan-tRNA ligase & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g08823	OVA4	organellar tryptophan-tRNA ligase & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene04169.t1	OVA4, Aspi01Gene04169	organellar tryptophan-tRNA ligase & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.16G037600.1	OVA4, Ceric.16G037600	organellar tryptophan-tRNA ligase & original...	0.03	OrthoFinder output from all 47 species
Ceric.1Z156000.1	OVA4, Ceric.1Z156000	organellar tryptophan-tRNA ligase & original...	0.02	OrthoFinder output from all 47 species
Dcu_g01309	OVA4	organellar tryptophan-tRNA ligase & original description: none	0.04	OrthoFinder output from all 47 species
Dde_g12437	OVA4	organellar tryptophan-tRNA ligase & original description: none	0.03	OrthoFinder output from all 47 species
Gb_29721	OVA4	tryptophan-tRNA ligase	0.03	OrthoFinder output from all 47 species
Msp_g05254	OVA4	organellar tryptophan-tRNA ligase & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g25968	OVA4	organellar tryptophan-tRNA ligase & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g11182	OVA4	organellar tryptophan-tRNA ligase & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g35390	No alias	organellar tryptophan-tRNA ligase & original description: none	0.02	OrthoFinder output from all 47 species
Solyc12g095850.2.1	OVA4, Solyc12g095850	tryptophan-tRNA ligase	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006399	tRNA metabolic process	None	Extended
BP	GO:0006418	tRNA aminoacylation for protein translation	IEA	Interproscan
BP	GO:0006520	amino acid metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016874	ligase activity	None	Extended
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0043038	amino acid activation	None	Extended
BP	GO:0043039	tRNA aminoacylation	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140101	catalytic activity, acting on a tRNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0006629	lipid metabolic process	IEP	HCCA
MF	GO:0016765	transferase activity, transferring alkyl or aryl (other than methyl) groups	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002305	aa-tRNA-synth_Ic	57	352

External Links

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LOC_Os01g54020.1 (OVA4, LOC_Os01g54020)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation