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  5. LOC_Os01g56070.3

LOC_Os01g56070.3 (LOC_Os01g56070)


Aliases : LOC_Os01g56070

Description : RING-HC-class E3 ligase


Gene families : OG0000266 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000266_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g56070.3

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00024p00165910 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
AMTR_s00048p00164020 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.02 OrthoFinder output from all 47 species
AT1G74990 No alias RING/U-box superfamily protein 0.04 OrthoFinder output from all 47 species
Adi_g012747 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g51084 No alias E3 ubiquitin ligase *(RMA/MUSE) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g53597 No alias E3 ubiquitin ligase *(RMA/MUSE) & original description: none 0.06 OrthoFinder output from all 47 species
Azfi_s0043.g027095 No alias E3 ubiquitin ligase *(RMA/MUSE) & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.10G009800.1 Ceric.10G009800 E3 ubiquitin ligase *(RMA/MUSE) & original description:... 0.04 OrthoFinder output from all 47 species
Ceric.18G045300.1 Ceric.18G045300 not classified & original description: pacid=50622046... 0.05 OrthoFinder output from all 47 species
Ceric.18G045400.1 Ceric.18G045400 E3 ubiquitin ligase *(RMA/MUSE) & original description:... 0.03 OrthoFinder output from all 47 species
Ehy_g05289 No alias E3 ubiquitin ligase *(RMA/MUSE) & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g11588 No alias E3 ubiquitin ligase *(RMA/MUSE) & original description: none 0.03 OrthoFinder output from all 47 species
Len_g58011 No alias E3 ubiquitin ligase *(RMA/MUSE) & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g40712 No alias E3 ubiquitin ligase *(RMA/MUSE) & original description: none 0.03 OrthoFinder output from all 47 species
Mp8g08340.1 No alias RING-HC-class E3 ligase 0.04 OrthoFinder output from all 47 species
Ppi_g46409 No alias E3 ubiquitin ligase *(RMA/MUSE) & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000757 No alias E3 ubiquitin ligase *(RMA/MUSE) & original description:... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0073.g017142 No alias E3 ubiquitin ligase *(RMA/MUSE) & original description:... 0.03 OrthoFinder output from all 47 species
Sam_g24563 No alias E3 ubiquitin ligase *(RMA/MUSE) & original description: none 0.04 OrthoFinder output from all 47 species
Solyc02g089870.3.1 Solyc02g089870 RING-HC-class E3 ligase 0.03 OrthoFinder output from all 47 species
Tin_g22866 No alias E3 ubiquiTin ligase *(RMA/MUSE) & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR018957 Znf_C3HC4_RING-type 27 67
No external refs found!